Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/spark …

…into kill

Conflicts:
	core/src/test/scala/org/apache/spark/JobCancellationSuite.scala

core/src/main/scala/org/apache/spark/api/java/JavaSparkContext.scala

@@ -570,6 +570,21 @@ class JavaSparkContext(val sc: SparkContext) extends JavaSparkContextVarargsWork
    * // In a separate thread:
    * sc.cancelJobGroup("some_job_to_cancel");
    * }}}
+   *
+   * If interruptOnCancel is set to true for the job group, then job cancellation will result
+   * in Thread.interrupt() being called on the job's executor threads. This is useful to help ensure
+   * that the tasks are actually stopped in a timely manner, but is off by default due to HDFS-1208,
+   * where HDFS may respond to Thread.interrupt() by marking nodes as dead.
+   */
+  def setJobGroup(groupId: String, description: String, interruptOnCancel: Boolean): Unit =
+    sc.setJobGroup(groupId, description, interruptOnCancel)
+
+  /**
+   * Assigns a group ID to all the jobs started by this thread until the group ID is set to a
+   * different value or cleared.
+   *
+   * @see `setJobGroup(groupId: String, description: String, interruptThread: Boolean)`.
+   *      This method sets interruptOnCancel to false.
    */
   def setJobGroup(groupId: String, description: String): Unit = sc.setJobGroup(groupId, description)
 

core/src/test/scala/org/apache/spark/JobCancellationSuite.scala

@@ -21,7 +21,7 @@ import java.util.concurrent.Semaphore
 
 import scala.concurrent.Await
 import scala.concurrent.ExecutionContext.Implicits.global
-import scala.concurrent.duration.Duration
+import scala.concurrent.duration._
 import scala.concurrent.future
 
 import org.scalatest.{BeforeAndAfter, FunSuite}
@@ -130,13 +130,43 @@ class JobCancellationSuite extends FunSuite with ShouldMatchers with BeforeAndAf
       sc.parallelize(1 to 10000, 2).map { i => Thread.sleep(10); i }.count()
     }
 
+    // Block until both tasks of job A have started and cancel job A.
+    sem.acquire(2)
+
     sc.clearJobGroup()
     val jobB = sc.parallelize(1 to 100, 2).countAsync()
+    sc.cancelJobGroup("jobA")
+    val e = intercept[SparkException] { Await.result(jobA, Duration.Inf) }
+    assert(e.getMessage contains "cancel")
+
+    // Once A is cancelled, job B should finish fairly quickly.
+    assert(jobB.get() === 100)
+  }
+
+  test("job group with interruption") {
+    sc = new SparkContext("local[2]", "test")
+
+    // Add a listener to release the semaphore once any tasks are launched.
+    val sem = new Semaphore(0)
+    sc.addSparkListener(new SparkListener {
+      override def onTaskStart(taskStart: SparkListenerTaskStart) {
+        sem.release()
+      }
+    })
+
+    // jobA is the one to be cancelled.
+    val jobA = future {
+      sc.setJobGroup("jobA", "this is a job to be cancelled", interruptOnCancel = true)
+      sc.parallelize(1 to 10000, 2).map { i => Thread.sleep(100000); i }.count()
+    }
 
     // Block until both tasks of job A have started and cancel job A.
     sem.acquire(2)
+
+    sc.clearJobGroup()
+    val jobB = sc.parallelize(1 to 100, 2).countAsync()
     sc.cancelJobGroup("jobA")
-    val e = intercept[SparkException] { Await.result(jobA, Duration.Inf) }
+    val e = intercept[SparkException] { Await.result(jobA, 5.seconds) }
     assert(e.getMessage contains "cancel")
 
     // Once A is cancelled, job B should finish fairly quickly.

core/src/test/scala/org/apache/spark/scheduler/SparkListenerSuite.scala

@@ -50,9 +50,9 @@ class SparkListenerSuite extends FunSuite with LocalSparkContext with ShouldMatc
     (1 to 5).foreach { _ => bus.post(SparkListenerJobEnd(0, JobSucceeded)) }
     assert(counter.count === 0)
 
-    // Starting listener bus should flush all buffered events (asynchronously, hence the sleep)
+    // Starting listener bus should flush all buffered events
     bus.start()
-    Thread.sleep(1000)
+    assert(bus.waitUntilEmpty(WAIT_TIMEOUT_MILLIS))
     assert(counter.count === 5)
 
     // After listener bus has stopped, posting events should not increment counter
@@ -177,6 +177,7 @@ class SparkListenerSuite extends FunSuite with LocalSparkContext with ShouldMatc
     listener.stageInfos.clear()
 
     rdd3.count()
+    assert(sc.listenerBus.waitUntilEmpty(WAIT_TIMEOUT_MILLIS))
     listener.stageInfos.size should be {2} // Shuffle map stage + result stage
     val stageInfo3 = listener.stageInfos.keys.find(_.stageId == 2).get
     stageInfo3.rddInfos.size should be {2} // ShuffledRDD, MapPartitionsRDD

graphx/src/main/scala/org/apache/spark/graphx/Graph.scala

@@ -46,7 +46,7 @@ abstract class Graph[VD: ClassTag, ED: ClassTag] protected () extends Serializab
    * @note vertex ids are unique.
    * @return an RDD containing the vertices in this graph
    */
-  val vertices: VertexRDD[VD]
+  @transient val vertices: VertexRDD[VD]
 
   /**
    * An RDD containing the edges and their associated attributes.  The entries in the RDD contain
@@ -59,7 +59,7 @@ abstract class Graph[VD: ClassTag, ED: ClassTag] protected () extends Serializab
    * along with their vertex data.
    *
    */
-  val edges: EdgeRDD[ED]
+  @transient val edges: EdgeRDD[ED]
 
   /**
    * An RDD containing the edge triplets, which are edges along with the vertex data associated with
@@ -77,7 +77,7 @@ abstract class Graph[VD: ClassTag, ED: ClassTag] protected () extends Serializab
    * val numInvalid = graph.triplets.map(e => if (e.src.data == e.dst.data) 1 else 0).sum
    * }}}
    */
-  val triplets: RDD[EdgeTriplet[VD, ED]]
+  @transient val triplets: RDD[EdgeTriplet[VD, ED]]
 
   /**
    * Caches the vertices and edges associated with this graph at the specified storage level.

graphx/src/main/scala/org/apache/spark/graphx/GraphOps.scala

@@ -34,28 +34,28 @@ import scala.util.Random
 class GraphOps[VD: ClassTag, ED: ClassTag](graph: Graph[VD, ED]) extends Serializable {
 
   /** The number of edges in the graph. */
-  lazy val numEdges: Long = graph.edges.count()
+  @transient lazy val numEdges: Long = graph.edges.count()
 
   /** The number of vertices in the graph. */
-  lazy val numVertices: Long = graph.vertices.count()
+  @transient lazy val numVertices: Long = graph.vertices.count()
 
   /**
    * The in-degree of each vertex in the graph.
    * @note Vertices with no in-edges are not returned in the resulting RDD.
    */
-  lazy val inDegrees: VertexRDD[Int] = degreesRDD(EdgeDirection.In)
+  @transient lazy val inDegrees: VertexRDD[Int] = degreesRDD(EdgeDirection.In)
 
   /**
    * The out-degree of each vertex in the graph.
    * @note Vertices with no out-edges are not returned in the resulting RDD.
    */
-  lazy val outDegrees: VertexRDD[Int] = degreesRDD(EdgeDirection.Out)
+  @transient lazy val outDegrees: VertexRDD[Int] = degreesRDD(EdgeDirection.Out)
 
   /**
    * The degree of each vertex in the graph.
    * @note Vertices with no edges are not returned in the resulting RDD.
    */
-  lazy val degrees: VertexRDD[Int] = degreesRDD(EdgeDirection.Either)
+  @transient lazy val degrees: VertexRDD[Int] = degreesRDD(EdgeDirection.Either)
 
   /**
    * Computes the neighboring vertex degrees.

graphx/src/main/scala/org/apache/spark/graphx/impl/EdgePartition.scala

@@ -34,10 +34,10 @@ import org.apache.spark.graphx.util.collection.PrimitiveKeyOpenHashMap
  */
 private[graphx]
 class EdgePartition[@specialized(Char, Int, Boolean, Byte, Long, Float, Double) ED: ClassTag](
-    val srcIds: Array[VertexId],
-    val dstIds: Array[VertexId],
-    val data: Array[ED],
-    val index: PrimitiveKeyOpenHashMap[VertexId, Int]) extends Serializable {
+    @transient val srcIds: Array[VertexId],
+    @transient val dstIds: Array[VertexId],
+    @transient val data: Array[ED],
+    @transient val index: PrimitiveKeyOpenHashMap[VertexId, Int]) extends Serializable {
 
   /**
    * Reverse all the edges in this partition.