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I'm not sure how best to fix this. I'd rather not maintain my own fork of bcftools just to fix this compilation issue. Hopefully the samtools team can provide a fix. In the meantime, you have to remove the -rdynamic flags manually from libs/bcftools/Makefile and libs/samtools/Makefile.
a la https://stackoverflow.com/questions/29534519/why-gcc-doesnt-recognize-rdynamic-option
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