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How to build a graph from input file? #93

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jermp opened this issue Jul 5, 2021 · 1 comment
Closed

How to build a graph from input file? #93

jermp opened this issue Jul 5, 2021 · 1 comment

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@jermp
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jermp commented Jul 5, 2021

Hi,
I would like to do something trivial:
build a graph from an input file (.fastq format).
Yet, I haven't figured out how to do it
nor I have found instructions in the readme.

Note that it should be a trivial thing to do...

I would like to run something like:

./mccortex31 build -k 31 --input in.fastq --output out.ctx

How can one do it?

Thanks,
-Giulio

@jermp
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jermp commented Jul 5, 2021

I figured out myself, by specifying:

-s 1 -1 <input_filename>

Crazy format... :)

@jermp jermp closed this as completed Jul 5, 2021
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