Add additional unit tests and make rest work with new arguments

milnus · Nov 8, 2022 · 5608bcf · 5608bcf
1 parent 45b8050
commit 5608bcf
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Showing 8 changed files with 120 additions and 24 deletions.
diff --git a/unit_tests/Magphi_test.py b/unit_tests/Magphi_test.py
diff --git a/unit_tests/unit_test_data/TestBedMergeHandling/Contig_1~~simple_connect.bed b/unit_tests/unit_test_data/TestBedMergeHandling/Contig_1~~simple_connect.bed
@@ -1,2 +1,2 @@
-Contig_1	500	600	simple_connect_1
-Contig_1	700	800	simple_connect_2
+Contig_1	500	600	simple_connect_1	.	+
+Contig_1	700	800	simple_connect_2	.	+
diff --git a/unit_tests/unit_test_data/TestBedMergeHandling/Contig_1~~simple_connect_complement.bed b/unit_tests/unit_test_data/TestBedMergeHandling/Contig_1~~simple_connect_complement.bed
@@ -0,0 +1,2 @@
+Contig_1	500	600	simple_connect_1	.	-
+Contig_1	700	800	simple_connect_2	.	-
diff --git a/unit_tests/unit_test_data/TestExitWithError/tmp_folder/test_file_A.txt b/unit_tests/unit_test_data/TestExitWithError/tmp_folder/test_file_A.txt
diff --git a/unit_tests/unit_test_data/TestExitWithError/tmp_folder/test_file_B.txt b/unit_tests/unit_test_data/TestExitWithError/tmp_folder/test_file_B.txt
diff --git a/unit_tests/unit_test_data/TestExitWithError/tmp_folder/test_file_C.txt b/unit_tests/unit_test_data/TestExitWithError/tmp_folder/test_file_C.txt
diff --git a/unit_tests/unit_test_data/TestExitWithError/tmp_folder/test_file_D.txt b/unit_tests/unit_test_data/TestExitWithError/tmp_folder/test_file_D.txt
diff --git a/unit_tests/unit_test_data/TestPartitionOutputs/file.txt b/unit_tests/unit_test_data/TestPartitionOutputs/file.txt