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pioreactor_turbidostat_shiny Public
An R shiny app to analyse pioreactor OD600 measurements when running in turbidostat mode
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Corekaburra Public
Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes
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unique_CRISPRi_segments Public
Small iPython notebook to run seqkit and find number of unique CRISPRi sequences in a set of sequences
Jupyter Notebook MIT License UpdatedApr 8, 2024 -
Cross_replicore_similarities Public
Scripts to identify regions across complete genomes that have high similarity. These can be used to produce 'shadow plots' with relative genome positions
Python MIT License UpdatedMay 25, 2023 -
Magphi Public
Tool intended to pull out sequences and annotations between insertion sites specified by the user.
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedNov 22, 2022 -
panaroo Public
Forked from gtonkinhill/panarooAn updated pipeline for pangenome investigation
Python MIT License UpdatedJul 14, 2022 -
CRISPRi-seq Public
Forked from veeninglab/CRISPRi-seqDesign and efficiency evaluation of genome-wide sgRNA libraries for CRISPRi-seq
R GNU General Public License v3.0 UpdatedApr 8, 2022 -
Pan_genome_benchmarking Public
Collection of scripts and data to benchmark pan-genome tools
UpdatedMay 12, 2020 -
PIRATE Public
Forked from SionBayliss/PIRATEA toolbox for pangenome analysis and threshold evaluation.
Perl GNU General Public License v3.0 UpdatedJan 31, 2020 -
resplat-github-workshop Public
Forked from vivekkatial/resplat-github-workshopWorkshop for Github (Research Platform Services)
HTML UpdatedNov 11, 2019