admtp

admtp compiles all of the R code required in the ‘Adaptive Designs and Multiple Testing Procedures’ course run by Michael Grayling, Adrian Mander, David Robertson, and James Wason.

Installation

You can install the latest development version of admtp from Github with:

devtools::install_github("mjg211/admtp")

All

• Questions/Solutions to be added to /inst or vignette?

Practical 1

• error_rates(): Done
• test_corrections(): Done
• power_of_test_corrections(): Done

Practical 2

• mtp_power(): Needs help details and error checks
• gMCP(): Needs help details and error checks
• calcPower(): Needs help details and error checks
• simConfint(): Needs help details and error checks

Practical 3

• des_fixed(): Done (will add to OptGS)
• Uses functions from mvtnorm and singlearm that can be set up to be auto installed
• practical3.R: Majority contains no functions

Practical 4

• des_fixed(): Done (will add to OptGS)
• Uses functions from OptGS and MAMS that can be set up to be auto installed
• sim_gs(): Now available in OptGS
• des_ma() and mams_sep(): Now available in multiarm

Practical 5

• operatingcharacteristcs_dtl.R: Now available in multiarm
• allocation(): Needs help details and error checks
• differenceinbeta_givenx(): Needs help details and error checks
• differenceinbeta(): Needs help details and error checks
• findposterior(): Needs help details and error checks
• simulateadaptiveenrichment(): Needs help details and error checks
• operatingcharacteristics(): Needs help details and error checks

Practical 6

• addarm(): Needs help details and error checks
• practical6.R: No functions

Practical 7

• des_triangular(): Now available in OptGS
• sim_gs(): Now available in OptGS
• ssre_delta_density(): Needs help details and error checks
• ssre_delta_find_e2(): Needs help details and error checks
• ssre_delta(): Needs help details and error checks
• ssre_sigma(): Needs help details and error checks

Practical 8

• All gMCP_basic.R files covered above for Practical 2
• sim_gs(): Now available in OptGS
• pvaladjp(): Needs help details and error checks
• pvaltrunc(): Needs help details and error checks
• bonf(): Needs help details and error checks
• simes(): Needs help details and error checks
• incsimes(): Needs help details and error checks