Merge pull request #527 from RoanKanninga/master

send statistics to GAF
molgenis · May 30, 2016 · 4ddbb9f · 4ddbb9f
2 parents 808a463 + 7318851
commit 4ddbb9f
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Showing 2 changed files with 6 additions and 1 deletion.
diff --git a/compute5/NGS_Automated/automated_copyRawDataToPrm.sh b/compute5/NGS_Automated/automated_copyRawDataToPrm.sh
@@ -78,7 +78,11 @@ do
 					scp ${SAMPLESHEETSDIR}/${csvFile} ${groupname}-dm@calculon.hpc.rug.nl:${SAMPLESHEETSPRMDIR}
 					echo "finished copying data to calculon" >> ${LOGGER}
 					logFileStatistics=$(cat ${RAWDATADIR}/${filePrefix}/${filePrefix}*.log)
-					echo -e "Demultiplex statistics ${filePrefix}: \n\n ${logFileStatistics}" | mail -s "Demultiplex statistics ${filePrefix}" ${ONTVANGER}
+					if [ ${groupname} == "umcg-gaf" ]
+					then
+
+						echo -e "Demultiplex statistics ${filePrefix}: \n\n ${logFileStatistics}" | mail -s "Demultiplex statistics ${filePrefix}" ${GAFmail}
+					fi
 					echo -e "De data voor project ${filePrefix} is gekopieerd naar ${RAWDATADIRPRM}" | mail -s "${filePrefix} copied to permanent storage" ${ONTVANGER}
 
 				  	if [ -f $LOGDIR/${filePrefix}.failed ] 

diff --git a/compute5/NGS_Automated/umcg-gaf.cfg b/compute5/NGS_Automated/umcg-gaf.cfg
@@ -1 +1,2 @@
 GROUP="umcg-gaf"
+GAFmail="gcc-gaf@googlegroups.com"