fixing gd or gaf group in CopyToResultsDir

compute5/NGS_DNA/protocols/CopyToResultsDir.sh

@@ -205,8 +205,19 @@ then
 
 elif [[ "${host}" == *"gd-node"* || "${host}" == "zinc-finger.gcc.rug.nl" ]]
 then
+
+	if [[ "${logsDir}" == *"/groups/umcg-gd"* ]]
+	then
+		. ${EBROOTAUTOMATED}/parameters_gd.csv
+	elif [[ "${logsDir}" == *"/groups/umcg-gaf"* ]] 
+	then
+		. ${EBROOTAUTOMATED}/parameters_gaf.csv
+	else
+		echo "unknown groupname please run in gaf or gd"
+	fi
+
 	touch ${logsDir}/${project}.pipeline.finished
-        . $EBROOTAUTOMATED/zinc-finger.gcc.rug.nl.cfg
+        . ${EBROOTAUTOMATED}/zinc-finger.gcc.rug.nl.cfg
         . $EBROOTAUTOMATED/sharedConfig.cfg
 	echo "pipeline is finished, user ${ONTVANGER} has been mailed"
         printf "The results can be found: ${projectResultsDir}\n\nCheers from the GCC :)"| mail -s "NGS_DNA pipeline is finished for project ${project} on `date +%d/%m/%Y` `date +%H:%M`" ${ONTVANGER}