ELIXIR cloudportal workflow

aka Elixir QC EBI Qcloud TSI Cloud Portal

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Using nextflow

The workflow uses nextflow and makes ample use of the container feature. Example use:

../nextflow/nextflow run pxd2qc.nf -c ../nextflow/mynextflow.config -profile local --input PXD011124

based on the generic server Portal app

Input from PRIDE

Workflow inputs are PRIDE submission accessions (PXD). For starters, we will restrict ourselves to Q exactive thermo raw files.