gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

Publication Page for MPAL Paper 2019

simple jobs submission via command-line for AWS batch

Cscope database generator for Python source code

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them

Downloader for ENCODE

python module to plot beautiful and highly customizable genome browser tracks

A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability. DeepExplain also includes support for Shapley Values sampling. (ICLR 2018)

Slurm: A Highly Scalable Workload Manager

NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.

Real-life RESTful server example on Flask-RESTplus

A fast and flexible keyboard launcher

A curated list of Site Reliability and Production Engineering resources.

Racer support for Emacs

A curated awesome list of lists of interview questions. Feel free to contribute! 🎓

A lightweight, object-oriented finite state machine implementation in Python with many extensions