feat: allow reconstruction of amino acid sequences #1596

Job	Run time
test-pathogen-repo-ci (avian-flu)	1m 20s
test-pathogen-repo-ci (ebola)	1m 4s
test-pathogen-repo-ci (lassa)	1m 6s
test-pathogen-repo-ci (monkeypox)	2m 20s
test-pathogen-repo-ci (mumps)	1m 38s
test-pathogen-repo-ci (ncov)	1m 50s
test-pathogen-repo-ci (seasonal-flu)	1m 9s
test-pathogen-repo-ci (zika)	1m 25s
test (python=3.7 biopython=1.73)	11m 44s
test (python=3.7 biopython=1.76)	9m 51s
test (python=3.7 biopython=1.79)	14m 12s
test (python=3.7 biopython=latest)	10m 13s
test (python=3.8 biopython=1.76)	9m 40s
test (python=3.8 biopython=1.79)	11m 58s
test (python=3.8 biopython=1.80)	12m 5s
test (python=3.8 biopython=latest)	13m 2s
test (python=3.9 biopython=1.79)	12m 55s
test (python=3.9 biopython=1.80)	11m 53s
test (python=3.9 biopython=latest)	10m 4s
test (python=3.10 biopython=1.80)	12m 40s
test (python=3.10 biopython=latest)	10m 54s
test (python=3.11 biopython=1.80)	12m 59s
test (python=3.11 biopython=latest)	14m 38s
build-docs / build-conda	0s
build-docs / build-pip	1m 39s
codecov	20s
	3h 12m 39s

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