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Rename subsampling sections
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victorlin committed Mar 5, 2024
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8 changes: 4 additions & 4 deletions docs/usage/cli/filter.rst
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Expand Up @@ -56,8 +56,8 @@ To drop such strains, you can pass the filename to ``--exclude``:
--output-sequences filtered_sequences.fasta \
--output-metadata filtered_metadata.tsv
Subsampling
-----------
Subsampling within ``augur filter``
-----------------------------------

Another common filtering operation is subsetting of data to a achieve a more even spatio-temporal distribution or to cut-down data set size to more manageable numbers.
The filter command allows you to select a specific number of sequences from specific groups, for example one sequence per month from each country:
Expand All @@ -74,8 +74,8 @@ The filter command allows you to select a specific number of sequences from spec
--output-sequences subsampled_sequences.fasta \
--output-metadata subsampled_metadata.tsv
Subsampling beyond the capabilities of ``augur filter``
-------------------------------------------------------
Subsampling using multiple ``augur filter`` commands
----------------------------------------------------

There are some subsampling strategies in which a single call to ``augur filter``
does not suffice. One such strategy is "tiered subsampling". In this strategy,
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