Add test data and initial test for titers sub

nextstrain · Dec 7, 2022 · e6f431a · e6f431a
1 parent c457e7a
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diff --git a/tests/functional/titers/cram/titers-sub-with-tree.t b/tests/functional/titers/cram/titers-sub-with-tree.t
@@ -0,0 +1,12 @@
+Setup
+
+  $ pushd "$TESTDIR" > /dev/null
+  $ export AUGUR="${AUGUR:-../../../../bin/augur}"
+
+Test titer substitution model with alignment and tree inputs.
+
+  $ ${AUGUR} titers sub \
+  >   --alignment data/aa_seq_HA1.fasta \
+  >   --tree data/tree.nwk \
+  >   --output $TMP/titers-sub.json > /dev/null
+  $