[refine] enable divergence unit scaling without timetree

nextstrain · Jul 22, 2020 · e9b3eec · e9b3eec
1 parent 4c474a9
commit e9b3eec
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/augur/refine.py b/augur/refine.py
@@ -243,7 +243,8 @@ def run(args):
     elif args.divergence_units=='mutations':
         L = tt.seq_len
         for node in node_data['nodes']:
-            node_data['nodes'][node]['mutation_length'] *= L
+            if args.timetree:
+                node_data['nodes'][node]['mutation_length'] *= L
             node_data['nodes'][node]['branch_length'] *= L
     else:
         print("ERROR: divergence unit",args.divergence_units,"not supported!")