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augur curate abbreviate-authors #1483

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Tracked by #43
joverlee521 opened this issue Jun 24, 2024 · 1 comment
Closed
Tracked by #43

augur curate abbreviate-authors #1483

joverlee521 opened this issue Jun 24, 2024 · 1 comment
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@genehack

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Context

As the command name states, this should abbreviate an authors list to <first_author> et al.

Description

augur curate abbreviate-authors can start from transform-authors from ingest

Note: I'm going with abbreviate-authors to be more explicit as transform-authors seems too vague.
@joverlee521 joverlee521 mentioned this issue Jun 24, 2024
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@genehack genehack self-assigned this Jun 26, 2024
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Note: I'm going with abbreviate-authors to be more explicit as transform-authors seems too vague.

There is a part of me that really wants to call this abbrev-auths ...but I will resist.

genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Copy abbreviate-authors script from ingest into augur curate [#1483]
d865569 
* Convert script over to expected sub-command style
* Make code match comments (comments say "et al." in multiple places;
  code was adding "et al")
* Add type hints throughout
* Add tests
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Update CHANGES [#1483]
58a0717
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Copy abbreviate-authors script from ingest into augur curate [#1483]
3458871 
* Convert script over to expected sub-command style
* Make code match comments (comments say "et al." in multiple places;
  code was adding "et al")
* Add type hints throughout
* Add tests
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Update CHANGES [#1483]
383a5bf
@genehack genehack mentioned this issue Jun 28, 2024
Merged
2 tasks
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Copy abbreviate-authors script from ingest into augur curate [#1483]
748a588 
* Convert script over to expected sub-command style
* Make code match comments (comments say "et al." in multiple places;
  code was adding "et al")
* Add type hints throughout
* Add tests
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Update CHANGES [#1483]
2fa4945
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Copy abbreviate-authors script from ingest into augur curate [#1483]
f8af6ba 
* Convert script over to expected sub-command style
* Make code match comments (comments say "et al." in multiple places;
  code was adding "et al")
* Add type hints throughout
* Add tests
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Update CHANGES [#1483]
2ab6c25
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Copy abbreviate-authors script from ingest into augur curate [#1483]
a891466 
* Convert script over to expected sub-command style
* Make code match comments (comments say "et al." in multiple places;
  code was adding "et al")
* Add type hints throughout
* Add tests
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Update CHANGES [#1483]
1523b81
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Copy script from ingest [#1483]
2a1bcd8
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Port abbreviate-authors script from ingest into augur curate style [
67b1517 
#1483]

* Convert script over to expected sub-command style
* Make code match comments (comments say "et al." in multiple places;
  code was adding "et al")
* Add type hints throughout
* Add tests
genehack added a commit that referenced this issue Jun 28, 2024
@genehack
Update CHANGES [#1483]
b3e2ec9
@genehack genehack closed this as completed Jul 1, 2024
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