Rename force inclusion filtering functions

[victorlin]

Description of proposed changes

• include -> force_include_strains
• include_by_include_where -> force_include_where

I found the existing names a bit vague/confusing. These names are more descriptive in my opinion. Open to other suggestions.

Related issue(s)

N/A

Testing

• Updated test data file
• CI passes

Checklist

• Add a message in CHANGES.md summarizing the changes in this PR. Keep headers and formatting consistent with the rest of the file.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 59.64%. Comparing base (cea6b96) to head (73a9ae5).
Report is 1292 commits behind head on master.

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #1006   +/-   ##
=======================================
  Coverage   59.64%   59.64%           
=======================================
  Files          53       53           
  Lines        6317     6317           
  Branches     1586     1586           
=======================================
  Hits         3768     3768           
  Misses       2286     2286           
  Partials      263      263           

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