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Allow users to specify a titer attribute prefix #1106

Merged
merged 4 commits into from
Dec 19, 2022
Merged

Allow users to specify a titer attribute prefix #1106

merged 4 commits into from
Dec 19, 2022

Commits on Dec 19, 2022

  1. Allow users to specify a titer attribute prefix 

    Allows users to prefix the node data JSON attributes produced by `augur
titers` subcommands (e.g., `cTiter`, `dTiter`, etc.) with a custom
string. This change allows users to run multiple titer models for a
single build and collect their results into an Auspice JSON without
collisions in the node data attribute namespace.
    @huddlej
    huddlej committed Dec 19, 2022
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  2. Add test data and tests for titer models 

    Adds test data based on public titer data and sequences from the
measurements panel paper [1] and adds functional tests for basic titer
model commands and the new commands with attribute prefixes.

[1] https://github.com/blab/measurements-panel/tree/main/data
    @huddlej
    huddlej committed Dec 19, 2022
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  3. Note new titers feature in change log

    @huddlej
    huddlej committed Dec 19, 2022
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  4. Document node attributes in titer model JSONs 

    Documents the specific attributes that get the custom prefix in titer
model node data JSON outputs and clarifies the use case for the
attribute prefix argument.
    @huddlej
    huddlej committed Dec 19, 2022
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