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feat: complex CDSs within augur ancestral #1333

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feat: complex CDSs within augur ancestral #1333

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Commits on Nov 4, 2023

  1. feat: output genome annotations for complex CDS 

    Auspice now supports multi-part CDS annotations
This PR makes `augur translate` output the correct annotation for complex CDSs

Complex CDSs are detected through `type(feat.location)` being `SeqFeature.CompountLocation`

Currently, this only works with genbank files, as our load_features utility function does not
deal with compound CDS in GFF files correctly

I tested this with MERSs complex ORF1ab

Partially resolves #1280
    @corneliusroemer
    corneliusroemer committed Nov 4, 2023
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