add export v1 subcommand to augur v5
#398
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Adds a `augur export v1` subcommand to augur v5, which mimics the `augur export v1` subcommand present in augur v6. This is desirable as it allows us to write Snakefiles for augur builds which will work with both augur v5 & augur v6. (Note that it's not recommended to mix-and-match within a single run.) Note that (augur v5's) `export v1` contains a subset of the arguments available to `export`. The zika test build is modified to use the `augur export v1` command.
trvrb
approved these changes
Nov 8, 2019
|
This looks great James! Code looks good. Tested and works as expected as well. |
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Adds a
augur export v1subcommand to augur v5, which mimics theaugur export v1subcommand present in augur v6. This is desirable as it allows us to write Snakefiles for augur builds which will work with both augur v5 & augur v6. (Note that it's not recommended to mix-and-match within a single run.)Note that (augur v5's)
export v1contains a subset of the arguments available toexport.The zika test build is modified to use the
augur export v1command.