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Used the shquote function on the MAFFT add argument filename #452

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tsibley merged 1 commit into nextstrain:master from CameronDevine:mafft_quote

Mar 9, 2020

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CameronDevine commented Mar 7, 2020

In the generate_alignment_cmd function, all filenames are placed in quotation marks using the shquote function, except for the --add argument.


          Used the shquote function on the mafft add argument filename

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CameronDevine mentioned this pull request

Alignment Name with Spaces Breaks mafft Call #388

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tsibley left a comment

Thanks @CameronDevine, this looks good to me.

tsibley merged commit 7c119d1 into nextstrain:master

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