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25.2.0

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@github-actions github-actions released this 24 Jul 16:41

These release notes are automatically extracted from the full changelog.

Features

  • export v2: we now limit numerical precision on floats in the JSON. This should not change how a dataset is displayed / interpreted in Auspice but allows the gzipped & minimised JSON filesize to be reduced by around 30% (dataset-dependent). #1512 (@jameshadfield)
  • traits, export v2: augur traits now reports all confidence values above 0.1% rather than limiting them to the top 4 results. There is no change in the eventual Auspice dataset as augur export v2 will still only consider the top 4. #1512 (@jameshadfield)
  • curate: Excel (.xlsx and .xls) and OpenOffice (.ods) spreadsheet files are now also supported as metadata inputs (--metadata). The first sheet in the workbook is read as tabular data. #1550 (@tsibley)

Bug Fixes

  • titers sub: Fixes a bug where antigenic weights were assigned to branches for substitutions in the incorrect order of <derived allele><position><ancestral allele> instead of <ancestral allele><position><derived allele>. #1555 (@huddlej)