correct whitespace errors

These were introduced during rebasing while working on the extend branch due to misconfigured (global) gitconfig (it would replace 8 spaces with a tab character)
nextstrain · Jan 15, 2019 · c8f94cc · c8f94cc
1 parent c36ca60
commit c8f94cc
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Showing 17 changed files with 237 additions and 237 deletions.
diff --git a/cli/build.js b/cli/build.js
@@ -41,13 +41,13 @@ const run = (args) => {
       console.log(stats.toString({colors: true}));
     } else {
       if (stats.hasWarnings()) {
-	utils.warn("Webpack has warnings (run with '--verbose' to see them)");
+        utils.warn("Webpack has warnings (run with '--verbose' to see them)");
       }
       if (global.AUSPICE_VERBOSE) {
-	console.log(stats.toString({colors: true}));
+        console.log(stats.toString({colors: true}));
       }
       if (customOutputPath) {
-	utils.exportIndexDotHtml({relative: args.serverless});
+        utils.exportIndexDotHtml({relative: args.serverless});
       }
     }
   });

diff --git a/cli/server/parseNarrative.js b/cli/server/parseNarrative.js
@@ -29,13 +29,13 @@ const makeFrontMatterBlock = (frontMatter) => {
       utils.warn(`Narrative parsing -- can't do author arrays yet`);
     } else if (typeof frontMatter.authors === 'string') {
       if (frontMatter.authorLinks && typeof frontMatter.authorLinks === "string") {
-	markdown.push(`### Author: [${frontMatter.authors}](${frontMatter.authorLinks})`);
+        markdown.push(`### Author: [${frontMatter.authors}](${frontMatter.authorLinks})`);
       } else {
-	markdown.push(`### Author: ${frontMatter.authors}`);
+        markdown.push(`### Author: ${frontMatter.authors}`);
       }
       if (frontMatter.affiliations && typeof frontMatter.affiliations === "string") {
-	markdown[markdown.length-1] += " <sup> 1 </sup>";
-	markdown.push(`<sup> 1 </sup> ${frontMatter.affiliations}`);
+        markdown[markdown.length-1] += " <sup> 1 </sup>";
+        markdown.push(`<sup> 1 </sup> ${frontMatter.affiliations}`);
       }
     }
   }

diff --git a/docs-src/website/sidebars.json b/docs-src/website/sidebars.json
@@ -8,20 +8,20 @@
     "Customisations": [
       "customisations/introduction",
       {
-	"type": "subcategory",
-	"label": "Customising the Client",
-	"ids": [
-	  "customisations/client/componentInterfaces",
-	  "customisations/client/sidebarTheme"
-	]
+        "type": "subcategory",
+        "label": "Customising the Client",
+        "ids": [
+          "customisations/client/componentInterfaces",
+          "customisations/client/sidebarTheme"
+        ]
       },
       {
-	"type": "subcategory",
-	"label": "Customising the Server",
-	"ids": [
-	  "customisations/server/charonAPI",
-	  "customisations/server/serverless"
-	]
+        "type": "subcategory",
+        "label": "Customising the Server",
+        "ids": [
+          "customisations/server/charonAPI",
+          "customisations/server/serverless"
+        ]
       },
       "customisations/authentication"
     ],

diff --git a/src/components/controls/choose-branch-labelling.js b/src/components/controls/choose-branch-labelling.js
@@ -17,19 +17,19 @@ class ChooseBranchLabelling extends React.Component {
   render() {
     return (
       <div style={{paddingTop: 5}}>
-	<SidebarSubtitle>
-	  Branch Labels
-	</SidebarSubtitle>
-	<div style={{width: controlsWidth, fontSize: 14}}>
-	  <Select
-	    value={this.props.selected}
-	    options={this.props.available.map((x) => ({value: x, label: x}))}
-	    clearable={false}
-	    searchable={false}
-	    multi={false}
-	    onChange={this.change}
-	  />
-	</div>
+        <SidebarSubtitle>
+          Branch Labels
+        </SidebarSubtitle>
+        <div style={{width: controlsWidth, fontSize: 14}}>
+          <Select
+            value={this.props.selected}
+            options={this.props.available.map((x) => ({value: x, label: x}))}
+            clearable={false}
+            searchable={false}
+            multi={false}
+            onChange={this.change}
+          />
+        </div>
       </div>
     );
   }

diff --git a/src/components/controls/choose-dataset-select.js b/src/components/controls/choose-dataset-select.js
@@ -39,7 +39,7 @@ class ChooseDatasetSelect extends React.Component {
           clearable={false}
           searchable={false}
           multi={false}
-	  onChange={(opt) => {this.changeDataset(this.createDataPath(opt.value));}}
+          onChange={(opt) => {this.changeDataset(this.createDataPath(opt.value));}}
         />
       </div>
     );

diff --git a/src/components/controls/choose-dataset.js b/src/components/controls/choose-dataset.js
@@ -52,9 +52,9 @@ class ChooseDataset extends React.Component {
     if (!this.props.available || !this.props.available.datasets) {
       /* TODO expose this to the extension API */
       if (this.props.source === "github") {
-	return (<GithubInfo/>);
+        return (<GithubInfo/>);
       } else if (this.props.source === "dropped") {
-	return (<DroppedFiles/>);
+        return (<DroppedFiles/>);
       }
       return (<BareDataPath source={this.props.source} pathname={this.props.pathname}/>);
     }
@@ -65,7 +65,7 @@ class ChooseDataset extends React.Component {
       .split("/");
     displayedDataset.forEach((part, idx) => {
       if (part.includes(":")) {
-	displayedDataset[idx] = part.split(":")[0];
+        displayedDataset[idx] = part.split(":")[0];
       }
     });
 
@@ -74,7 +74,7 @@ class ChooseDataset extends React.Component {
     this.props.available.datasets.forEach((d) => {
       const firstField = d.request.split("/")[0];
       if (!options[0].includes(firstField)) {
-	options[0].push(firstField);
+        options[0].push(firstField);
       }
     });
 
@@ -83,12 +83,12 @@ class ChooseDataset extends React.Component {
       in order to create available alternatives for each field */
       options[idx] = [];
       this.props.available.datasets.forEach((singleAvailableOption) => {
-	/* if the parents (and their parents etc) of this choice match,
-	then we add that as a valid option */
-	const fields = singleAvailableOption.request.split("/");
-	if (checkEqualityOfArrays(fields, displayedDataset, idx) && options[idx].indexOf(fields[idx]) === -1) {
-	  options[idx].push(fields[idx]);
-	}
+        /* if the parents (and their parents etc) of this choice match,
+        then we add that as a valid option */
+        const fields = singleAvailableOption.request.split("/");
+        if (checkEqualityOfArrays(fields, displayedDataset, idx) && options[idx].indexOf(fields[idx]) === -1) {
+          options[idx].push(fields[idx]);
+        }
       });
     }
 
@@ -99,8 +99,8 @@ class ChooseDataset extends React.Component {
           <ChooseDatasetSelect
             dispatch={this.props.dispatch}
             source={this.props.source}
-	    choice_tree={displayedDataset.slice(0, i)}
-	    selected={displayedDataset[i]}
+            choice_tree={displayedDataset.slice(0, i)}
+            selected={displayedDataset[i]}
             options={options[i]}
           />
         </div>

diff --git a/src/components/controls/choose-second-tree.js b/src/components/controls/choose-second-tree.js
@@ -25,37 +25,37 @@ class ChooseSecondTree extends React.Component {
       .split("/");
     displayedDataset.forEach((part, idx) => {
       if (part.includes(":")) {
-	displayedDataset[idx] = part.split(":")[0];
+        displayedDataset[idx] = part.split(":")[0];
       }
     });
     const idxOfTree = displayedDataset.indexOf(this.props.treeName);
 
     const matches = this.props.available.datasets
       .map((datasetObj) => datasetObj.request.split("/"))
       .filter((dataset) => {
-	if (dataset.length !== displayedDataset.length) return false;
-	for (let i=0; i<dataset.length; i++) {
-	  if (i===idxOfTree) {
-	    if (dataset[i] === displayedDataset[i]) {
-	      return false; // don't match the same tree name
-	    }
-	  } else if (dataset[i] !== displayedDataset[i]) {
-	    return false; // everything apart from the tree much match
+        if (dataset.length !== displayedDataset.length) return false;
+        for (let i=0; i<dataset.length; i++) {
+          if (i===idxOfTree) {
+            if (dataset[i] === displayedDataset[i]) {
+              return false; // don't match the same tree name
+            }
+          } else if (dataset[i] !== displayedDataset[i]) {
+            return false; // everything apart from the tree much match
           }
         }
-	return true;
+        return true;
       });
 
     const options = matches.map((m) => m[idxOfTree]);
     if (this.props.showTreeToo) options.unshift("REMOVE");
 
     return (
       <div>
-	<SidebarSubtitle spaceAbove>
-	  Second Tree
-	</SidebarSubtitle>
-	<div key={"treetooselect"} style={{width: controlsWidth, fontSize: 14}}>
-	  <Select
+        <SidebarSubtitle spaceAbove>
+          Second Tree
+        </SidebarSubtitle>
+        <div key={"treetooselect"} style={{width: controlsWidth, fontSize: 14}}>
+          <Select
             name="selectTreeToo"
             id="selectTreeToo"
             value={this.props.showTreeToo}
@@ -67,7 +67,7 @@ class ChooseSecondTree extends React.Component {
               if (opt.value === "REMOVE") {
                 this.props.dispatch({type: REMOVE_TREE_TOO});
               } else {
-		const dataPath = [...displayedDataset];
+                const dataPath = [...displayedDataset];
                 dataPath.splice(idxOfTree, 1, opt.value);
                 this.props.dispatch(loadTreeToo(opt.value, dataPath));
               }

diff --git a/src/components/controls/map-animation.js b/src/components/controls/map-animation.js
@@ -47,49 +47,49 @@ class MapAnimationControls extends React.Component {
     return (
       <div id="mapAnimationControls">
 
-	<SidebarSubtitle spaceAbove>
-	  Animation Speed
-	</SidebarSubtitle>
+        <SidebarSubtitle spaceAbove>
+          Animation Speed
+        </SidebarSubtitle>
 
-	<SidebarButton
-	  selected={this.props.mapAnimationDurationInMilliseconds === 60000}
-	  onClick={this.handleChangeAnimationTimeClicked("slow")}
-	>
-	  Slow
-	</SidebarButton>
-	<SidebarButton
-	  selected={this.props.mapAnimationDurationInMilliseconds === 30000}
-	  onClick={this.handleChangeAnimationTimeClicked("medium")}
-	>
-	  Medium
-	</SidebarButton>
-	<SidebarButton
-	  selected={this.props.mapAnimationDurationInMilliseconds === 15000}
-	  onClick={this.handleChangeAnimationTimeClicked("fast")}
-	>
-	  Fast
-	</SidebarButton>
+        <SidebarButton
+          selected={this.props.mapAnimationDurationInMilliseconds === 60000}
+          onClick={this.handleChangeAnimationTimeClicked("slow")}
+        >
+          Slow
+        </SidebarButton>
+        <SidebarButton
+          selected={this.props.mapAnimationDurationInMilliseconds === 30000}
+          onClick={this.handleChangeAnimationTimeClicked("medium")}
+        >
+          Medium
+        </SidebarButton>
+        <SidebarButton
+          selected={this.props.mapAnimationDurationInMilliseconds === 15000}
+          onClick={this.handleChangeAnimationTimeClicked("fast")}
+        >
+          Fast
+        </SidebarButton>
 
-	<div style={{marginBottom: 5}}/>
+        <div style={{marginBottom: 5}}/>
 
-	<Toggle
-	  display
-	  on={this.props.mapAnimationShouldLoop}
-	  callback={() => {
-	    this.props.dispatch({ type: CHANGE_ANIMATION_LOOP, data: !this.props.mapAnimationShouldLoop });
-	  }}
-	  label="Loop animation"
-	/>
-	<br/>
-	<Toggle
-	  display
-	  on={this.props.mapAnimationCumulative}
-	  callback={() => {
-	    analyticsControlsEvent("change-animation-cumulative");
-	    this.props.dispatch({ type: CHANGE_ANIMATION_CUMULATIVE, data: !this.props.mapAnimationCumulative });
-	  }}
-	  label="Animate cumulative history"
-	/>
+        <Toggle
+          display
+          on={this.props.mapAnimationShouldLoop}
+          callback={() => {
+            this.props.dispatch({ type: CHANGE_ANIMATION_LOOP, data: !this.props.mapAnimationShouldLoop });
+          }}
+          label="Loop animation"
+        />
+        <br/>
+        <Toggle
+          display
+          on={this.props.mapAnimationCumulative}
+          callback={() => {
+            analyticsControlsEvent("change-animation-cumulative");
+            this.props.dispatch({ type: CHANGE_ANIMATION_CUMULATIVE, data: !this.props.mapAnimationCumulative });
+          }}
+          label="Animate cumulative history"
+        />
 
       </div>
     );

diff --git a/src/components/controls/search.js b/src/components/controls/search.js
@@ -112,10 +112,10 @@ class SearchStrains extends React.Component {
   render() {
     return (
       <Container>
-	<SidebarSubtitle spaceAbove>Search Strains</SidebarSubtitle>
-	<InputContainer>
-	  <Input ref={(r) => {this.ref = r;}} onFocus={() => this.updateVisibleStrains()}/>
-	</InputContainer>
+        <SidebarSubtitle spaceAbove>Search Strains</SidebarSubtitle>
+        <InputContainer>
+          <Input ref={(r) => {this.ref = r;}} onFocus={() => this.updateVisibleStrains()}/>
+        </InputContainer>
         <Cross show={this.state.show} onClick={this.removeSelection}/>
       </Container>
     );