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Feat/undeletions #1542

Merged
merged 3 commits into from
Sep 15, 2022
Merged

Feat/undeletions #1542

merged 3 commits into from
Sep 15, 2022

Commits on Sep 15, 2022

  1. Separate out undeletion mutations on branches

    Undeletions are inferred mutations from a gap to a base, e.g. `-400A`.
    In most cases these are bioinformatics errors, so this commit collects
    them into a separate category to enhance interoperability of lots of
    mutations. The actual base is visible if you click to copy the mutation
    list to the clipboard, but in my testing on nCoV datasets this is
    always the reference base.
    jameshadfield committed Sep 15, 2022
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  2. Tests + comments for categorisation of tip changes

    Work prompted by the preceeding commit, but I don't think any changes
    are actually needed. Note that depending on how the dataset was
    generated you can get what look like undeletions when the root
    sequence is a gap itself. I think this is rarer than undeletions
    on branches so not worth categorising at the present time.
    Added tests as the clearest way to document the behaviour here.
    jameshadfield committed Sep 15, 2022
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