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Vaccines crosses #490

Merged
merged 3 commits into from
Feb 5, 2018
Merged

Vaccines crosses #490

merged 3 commits into from
Feb 5, 2018

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jameshadfield
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@jameshadfield jameshadfield commented Feb 1, 2018

This PR adds the crosses over the vaccine strains and provides their dates in the hover / click info panels. It looks in the meta.json for the presence of vaccine_choices which i've just added to augur. If this is not present, no vaccine information is displayed.

Styling:
image

Available to view here: https://auspice-dev.herokuapp.com/flu/h3n2/ha/3y -> staging server toggle. (The initial colorBy is black I think because you are developing augur or because I don't run with titers)

@trvrb
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trvrb commented Feb 1, 2018

Thanks @jameshadfield. I'm testing this now (along with the augur commit nextstrain/augur@187b8f7.

@trvrb
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trvrb commented Feb 1, 2018

Though can I request styling that more closely matches nextflu? Both for the clade labels and for the vaccine crosses?

@jameshadfield
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I will do vaccine crosses similar - clade labels is another task!

@jameshadfield
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merging in now (style updates most welcome). Note that no datasets currently have the vaccine data in the meta JSON.

@jameshadfield jameshadfield merged commit 3fea6e4 into master Feb 5, 2018
@jameshadfield jameshadfield deleted the vaccines branch February 5, 2018 21:09
@trvrb
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trvrb commented Feb 5, 2018

Thanks for implementing this @jameshadfield. I just pushed updated JSONs to data.nextstrain.org, so this now loads on master with npm start.

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2 participants