rebuild #147

	name: Rebuild hmpxv1-big

	on:
	repository_dispatch:
	types:
	- rebuild
	- rebuild_hmpxv1-big

	workflow_dispatch:
	inputs:
	image:
	description: 'Specific container image to use for build (will override the default of "nextstrain build")'
	required: false

	env:
	NEXTSTRAIN_DOCKER_IMAGE: ${{ github.event.inputs.image }}

	jobs:
	rebuild_hmpxv1_big:
	runs-on: ubuntu-latest
	env:
	GITHUB_RUN_ID: ${{ github.run_id }}
	SLACK_CHANNELS: monkeypox-updates
	SLACK_TOKEN: ${{ secrets.SLACK_TOKEN }}
	steps:
	- uses: actions/checkout@v2
	- uses: nextstrain/.github/actions/setup-nextstrain-cli@master
	with:
	python-version: "3.10"

	- name: launch_build
	run: \|
	./bin/write-envdir env.d \
	AWS_DEFAULT_REGION \
	GITHUB_RUN_ID \
	SLACK_TOKEN \
	SLACK_CHANNELS

	nextstrain build \
	--aws-batch \
	--detach \
	--no-download \
	--exec env \
	--cpus 8 \
	--memory 32gib \
	. \
	envdir env.d snakemake notify_on_deploy \
	--configfiles config/config_hmpxv1_big.yaml config/nextstrain_automation.yaml \
	--cores 8 \
	--printshellcmds
	env:
	AWS_DEFAULT_REGION: ${{ secrets.AWS_DEFAULT_REGION }}
	AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
	AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}

	- name: notify_pipeline_failed
	if: ${{ failure() }}
	run: ./bin/notify-on-error

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