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rebuild

rebuild #150

name: Rebuild hmpxv1-big
on:
repository_dispatch:
types:
- rebuild
- rebuild_hmpxv1-big
workflow_dispatch:
inputs:
image:
description: 'Specific container image to use for build (will override the default of "nextstrain build")'
required: false
env:
NEXTSTRAIN_DOCKER_IMAGE: ${{ github.event.inputs.image }}
jobs:
rebuild_hmpxv1_big:
runs-on: ubuntu-latest
env:
GITHUB_RUN_ID: ${{ github.run_id }}
SLACK_CHANNELS: monkeypox-updates
SLACK_TOKEN: ${{ secrets.SLACK_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: nextstrain/.github/actions/setup-nextstrain-cli@master
with:
cli-version: ">=7.1.0"
python-version: "3.10"
- name: launch_build
run: |
nextstrain build \
--aws-batch \
--detach \
--no-download \
--cpus 8 \
--memory 32gib \
--env AWS_DEFAULT_REGION \
--env AWS_ACCESS_KEY_ID \
--env AWS_SECRET_ACCESS_KEY \
--env GITHUB_RUN_ID \
--env SLACK_TOKEN \
--env SLACK_CHANNELS \
. \
notify_on_deploy \
--configfiles config/config_hmpxv1_big.yaml config/nextstrain_automation.yaml
env:
AWS_DEFAULT_REGION: ${{ secrets.AWS_DEFAULT_REGION }}
AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
- name: notify_pipeline_failed
if: ${{ failure() }}
run: ./bin/notify-on-error