Use centralized transform-strain-names script

nextstrain · Sep 20, 2023 · 52d75f4 · 52d75f4
1 parent 19921cf
commit 52d75f4
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diff --git a/ingest/bin/transform-strain-names b/ingest/bin/transform-strain-names
diff --git a/ingest/workflow/snakemake_rules/transform.smk b/ingest/workflow/snakemake_rules/transform.smk
@@ -68,7 +68,7 @@ rule transform:
             | ./vendored/transform-field-names \
                 --field-map {params.field_map} \
             | augur curate normalize-strings \
-            | ./bin/transform-strain-names \
+            | ./vendored/transform-strain-names \
                 --strain-regex {params.strain_regex} \
                 --backup-fields {params.strain_backup_fields} \
             | ./bin/transform-date-fields \