Merge pull request #1154: gisaid/21L: Use only the 21L sequence from …

…references
nextstrain · Oct 1, 2024 · bc7652a · bc7652a
2 parents 8399290 + 567279a
commit bc7652a
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/nextstrain_profiles/nextstrain-gisaid-21L/prefilter.smk b/nextstrain_profiles/nextstrain-gisaid-21L/prefilter.smk
@@ -92,7 +92,8 @@ rule gisaid_21L_aligned:
         exec 2> {log:q}
 
         < {input.references:q} \
-          zstd \
+          seqkit grep --by-name --pattern 21L \
+        | zstd \
         > {output.aligned}
 
         < {input.aligned:q} \