Add GitHub action to run tests #671
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With the upcoming availability of GenBank intermediate files, this provides documentation of which assets are uploaded, to where, and how to start builds from these files.
Document and test remote inputs
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This workflow was originally implemented as part of #668, but I've split it into a separate PR to debug the failing tests. (Note that tests pass locally on my machine.)
Observed failures (so far...)
remote-inputs-uncompressedtest uses the inputdata/references_metadata.tsvand the following (seemingly stochastic) error was observed on GitHub runner:The
remote-inputs-compressedhas filtering steps which remove all sequences, thus causing a test failure.If the AWS keys are not needed, then we should remove them from the workflow. Note that
AWS_DEFAULT_REGION: us-east-1is needed when running on GitHub actions.