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Strep_Project2_Hipercow Public
Forked from DAChristina/Strep_Project2_HipercowR UpdatedJul 18, 2024 -
gubbins Public
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedApr 12, 2024 -
PopPUNK Public
Forked from bacpop/PopPUNKPopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Python Apache License 2.0 UpdatedFeb 16, 2024 -
maelaAntigens Public
R markdown document, and associated code, used for the analysis of the IgG immune response to pneumococcal proteins
R GNU General Public License v3.0 UpdatedDec 10, 2023 -
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pbp_AMR_prediction Public
Forked from bjeffrey92/pbp_AMR_predictionResearch code for a project aimed at improving our understanding of the genetic determinants of antibiotic resistance in Streptococcus pneumoniae
Python UpdatedJun 18, 2023 -
ska.rust Public
Forked from bacpop/ska.rustSplit k-mer analysis – version 2
Rust Apache License 2.0 UpdatedJun 1, 2023 -
progressionEstimation Public
R package for the estimation of microbial progression rates
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RCandy Public
Forked from ChrispinChaguza/RCandyRCandy: an R package for visualising homologous recombination events in bacterial genomes
R Other UpdatedOct 31, 2022 -
pp-sketchlib Public
Forked from bacpop/pp-sketchlibLibrary of sketching functions used by PopPUNK
C++ Apache License 2.0 UpdatedOct 18, 2022 -
genoPlotR Public
Forked from cran/genoPlotR❗ This is a read-only mirror of the CRAN R package repository. genoPlotR — Plot Publication-Grade Gene and Genome Maps. Homepage: http://genoplotr.r-forge.r-project.org/
R UpdatedSep 26, 2022 -
recognise Public
Precise inference of bacterial recombinations
Python GNU Affero General Public License v3.0 UpdatedSep 9, 2022 -
elfi Public
Forked from elfi-dev/elfiELFI - Engine for Likelihood-Free Inference
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mgeTransformation Public
Model of horizontal DNA transfer within a simple bacterial community
C++ UpdatedAug 20, 2019 -
pneumo-cgmlst Public
Core genome COGs for S. pneumoniae from Corander et al 2017 Nat. Ecol. Evol. 1:1950-60
1 UpdatedApr 8, 2019