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@ruggleslab Ruggles Lab

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    16 repositories

    • press

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • pyQUILTS

      Public
      Rebuilding QUILTS in Python.
      Python
      •9•0•0•0•Updated Jul 14, 2024Jul 14, 2024

    • rivet

      Public
      Website source code for analysis of ribosome / polysome profiling
      websitershiny-appsribosome-profilingpolysome-profiling
      R
      •0•1•0•0•Updated Nov 10, 2023Nov 10, 2023

    • hypercluster

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•3•0•Updated Oct 19, 2023Oct 19, 2023

    • phosphodisco

      Public
      Jupyter Notebook
      •
      MIT License
      •4•3•5•0•Updated Aug 17, 2023Aug 17, 2023

    • blackSheep

      Public
      Python
      •
      MIT License
      •4•10•0•2•Updated Jul 6, 2023Jul 6, 2023

    • ruggles

      Public
      repository of handy code from Ruggles lab members
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2023Apr 10, 2023

    • blacksheepr

      Public
      R package for outlier analysis
      R
      •
      MIT License
      •1•0•0•0•Updated Feb 22, 2023Feb 22, 2023

    • tutorial_test_repo

      Public
      0•0•0•0•Updated Sep 27, 2021Sep 27, 2021

    • jukebox

      Public
      R
      •6•5•2•0•Updated Jun 7, 2021Jun 7, 2021

    • hypercluster_fork

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•6•0•0•Updated Feb 5, 2021Feb 5, 2021

    • Pouch

      Public
      Repository for publicly available single cell counts and processing from UC tissue samples
      R
      •0•4•0•0•Updated Dec 4, 2020Dec 4, 2020

    • MCCS

      Public
      R
      •0•0•0•0•Updated Apr 21, 2020Apr 21, 2020

    • RewildedMice

      Public
      Source code and analysis scripts for rewilded mice analysis
      HTML
      •0•0•0•0•Updated Apr 6, 2020Apr 6, 2020

    • blacksheep_supp

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Oct 24, 2019Oct 24, 2019

    • proteogenomics

      Public
      0•0•0•0•Updated Jun 19, 2019Jun 19, 2019