Added symbolic links from mapped labels aparc.DKTatlas to FS names

pcamach2 · Mar 17, 2022 · 4dfa320 · 4dfa320
1 parent fd3c289
commit 4dfa320
Showing 1 changed file with 12 additions and 0 deletions.
diff --git a/recon_surf/recon-surf.sh b/recon_surf/recon-surf.sh
@@ -872,6 +872,18 @@ if [ "$fsaparc" == "0" ] ; then
       RunIt "$cmd" $LF "$CMDF"
   fi
 
+  # Symbolic link for TRACULA
+  pushd $ldir
+  cmd="ln -sf lh.aparc.DKTatlas.mapped.annot lh.aparc.DKTatlas.annot"
+  RunIt "$cmd" $LF
+  cmd="ln -sf rh.aparc.DKTatlas.mapped.annot rh.aparc.DKTatlas.annot"
+  RunIt "$cmd" $LF
+  cmd="ln -sf lh.aparc.DKTatlas.mapped.annot lh.aparc.annot"
+  RunIt "$cmd" $LF
+  cmd="ln -sf rh.aparc.DKTatlas.mapped.annot rh.aparc.annot"
+  RunIt "$cmd" $LF
+  popd
+
 fi