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@powellgenomicslab

Single Cell Computational Genomics

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  1. Nebulosa Nebulosa Public

    R package to visualize gene expression data based on weighted kernel density estimation

    R 66 6

  2. scPred scPred Public

    scPred package for cell type prediction from scRNA-seq data

    R 65 16

  3. DropletQC DropletQC Public

    Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data

    R 29 3

  4. onek1k_phase1 onek1k_phase1 Public

    Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types

    R 21 6

  5. ascend ascend Public

    Analysis of Single Cell Expression, Normalization and Differential expression

    R 12 11

  6. BGI_vs_Illumina_Benchmark BGI_vs_Illumina_Benchmark Public

    This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

    Shell 12 8

Repositories

Showing 10 of 35 repositories
  • sc-veQTL Public

    Analysis code for sc-veQTL study

    powellgenomicslab/sc-veQTL’s past year of commit activity
    R 2 GPL-3.0 1 0 0 Updated Jun 24, 2024
  • Demuxafy_manuscript Public

    Scripts used for manuscript for Demuxafy

    powellgenomicslab/Demuxafy_manuscript’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 13, 2024
  • Nebulosa Public

    R package to visualize gene expression data based on weighted kernel density estimation

    powellgenomicslab/Nebulosa’s past year of commit activity
    R 66 6 21 1 Updated Feb 27, 2024
  • scPred Public

    scPred package for cell type prediction from scRNA-seq data

    powellgenomicslab/scPred’s past year of commit activity
    R 65 MIT 16 19 1 Updated Jan 18, 2024
  • PEER_factors Public

    Contains analysis code to generate PEER factors from pseudo-bulk data and perform eQTL association analysis

    powellgenomicslab/PEER_factors’s past year of commit activity
    R 4 GPL-3.0 1 0 0 Updated Oct 28, 2023
  • Utilities Public

    A compilation of useful snippets for use on Brenner.

    powellgenomicslab/Utilities’s past year of commit activity
    Python 0 0 0 0 Updated Aug 9, 2023
  • hypothalamus_organoid_scRNA Public

    Code used to analyze hypothalamus organoid single cell RN

    powellgenomicslab/hypothalamus_organoid_scRNA’s past year of commit activity
    R 0 0 0 0 Updated Jul 10, 2023
  • iPSC_Village_scripts Public

    scripts used to analyze the iPSC village project

    powellgenomicslab/iPSC_Village_scripts’s past year of commit activity
    R 1 0 0 0 Updated May 6, 2023
  • Powell_lab_resources Public

    A public GitHub repo to share resources for common computational challenges

    powellgenomicslab/Powell_lab_resources’s past year of commit activity
    1 MIT 0 0 0 Updated Apr 28, 2023
  • SNP_imputation_1000g_hg38 Public

    pipeline for imputing snps on 1000g hg38 reference. repurposed from sceQTL-Gen for specific lab use

    powellgenomicslab/SNP_imputation_1000g_hg38’s past year of commit activity
    Python 0 0 0 0 Updated Feb 6, 2023

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