Neon code for Splice Junction Gene Sequence classification (EI / IE / Neither)
Ref: "https://archive.ics.uci.edu/ml/datasets/Molecular+Biology+%28Splice-junction+Gene+Sequences%29"
Have neon repo sync'd to local host and follow the steps to build the repo: https://github.com/NervanaSystems/neon
Place files given in this repo accordingly
~/neon/examples/gene/$ python splice_train_val.py
(.venv2) username@linuxhost:~/MyProjects/neon/examples/gene$ python splice_train_val.py Epoch 0 [Train |████████████████████| 2552/2552 batches, 0.14 cost, 12.77s] 2017-05-28 22:02:33,525 - neon - DISPLAY - Misclassification error = 0.6%
Known Issues: Temporary fix to avoid evaluation failure due to 'nan'