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intro-to-ancient-metagenomics-book Public
Forked from SPAAM-community/intro-to-ancient-metagenomics-bookIntroduction to Ancient Metagenomics Book
HTML Creative Commons Attribution 4.0 International UpdatedAug 5, 2024 -
rdenise.github.io Public
Forked from academicpages/academicpages.github.ioGithub Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
JavaScript MIT License UpdatedMay 15, 2024 -
broken2merge Public
The broken2merge software is designed to concatenate the genes that belong to the same species but appear to be broken due to assembly issues. It provides a solution for merging fragmented gene seq…
Python MIT License UpdatedMar 5, 2024 -
macsyfinder Public
Forked from gem-pasteur/macsyfinderMacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
Python GNU General Public License v3.0 UpdatedJan 5, 2024 -
OPERA-MS Public
Forked from CSB5/OPERA-MSOPERA-MS - Hybrid Metagenomic Assembler
C++ Other UpdatedNov 16, 2023 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedOct 29, 2023 -
tax_myPHAGE Public
Forked from amillard/tax_myPHAGEWorkflow to assign Taxonomy to a bacteriophage genome isolate
Python UpdatedOct 20, 2023 -
detection_virus_metagenomes Public
Workflow to detect and taxonomically annotate virus in metagenomes
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ICTV_database_creation Public
Download the genbank file from NCBI and create the ICTV database
Python MIT License UpdatedSep 11, 2023 -
16S_dada2 Public
Snakemake workflow for dada2 analysis of the data
Python MIT License UpdatedApr 3, 2023 -
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This script creates a metadata file with taxonomy annotations for each genome in RefSeq Viral
Python MIT License UpdatedMar 16, 2023 -
ViWrap Public
Forked from AnantharamanLab/ViWrapA wrapper to identify, bin, classify, and predict host-viral relationship for viruses
Python UpdatedFeb 3, 2023 -
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macsyfinder_snakemake Public
Quick pipeline to run snakemake on a big dataset using snakemake
Python MIT License UpdatedNov 7, 2022 -
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viral-pipeline-scripts Public
Forked from btemperton/viral-pipeline-scriptsPython UpdatedMay 5, 2022 -
hhsuite_workflow Public
Workflow to get hhsuite works from conda and fasta alignments
Python MIT License UpdatedMar 28, 2022 -
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ssn_movie Public
Create a image by image visualisation of a SSN based on user annotation
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DRAM Public
Forked from WrightonLabCSU/DRAMDistilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Python GNU General Public License v3.0 UpdatedFeb 14, 2022 -
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DeepVirFinder Public
Forked from cerebis/DeepVirFinderIdentifying viruses from metagenomic data by deep learning
Python Other UpdatedJan 16, 2022 -
prokka Public
Forked from tseemann/prokka⚡ ♒ Rapid prokaryotic genome annotation
Perl UpdatedJan 4, 2022 -
phylo_distribution Public
Allow to create a figure similar to the figure 4 of Denise et al 2020 PLoS Biology
Python UpdatedSep 8, 2021 -
ssn2tsv Public
Forked from vdclab/ssn2tsvScript that allows to transform SSN XGMML to tabulated format file
Python UpdatedMay 21, 2021 -
macsyfinder_extract Public
script to extract information of macsyfinder report
Python UpdatedApr 30, 2019 -
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