Analysing the genomic context of mobile genes

Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates

Datasets for https://github.com/nextstrain/nextclade

Der vorliegende Datansatz enthält umfassende Informationen zu SARS-CoV-2-Infektionen in Deutschland, die gemäß dem Infektionsschutzgesetze (IfSG) von den Gesundheitsämtern an das Robert Koch-Instit…

Nextstrain build for mpox virus

A bioinformatic toolkit to align genome assemblies into pangenome graphs

COVID-19 Italia - Monitoraggio situazione

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)

This is the development home of the workflow management system Snakemake. For general information, see

A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.

INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomic surveillance

Analysis of fitness landscape of HIV-1 from longitudinal data

Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

Visualization of the pan-genome output by panX

hybrid assembly pipeline for bacterial genomes

Fast pairwise sequence alignment using SeqAn, in Python.

Accelerated BLAST compatible local sequence aligner.

Web application for deep sequencing on longitudinal HIV-1 samples from patients.

Pipeline components for real-time phylodynamic analysis

FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the product of mutation rate and population size is larger than one.…

Real-time tracking of influenza evolution

A Sanger chromatograph viewer.