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Issues list

When running polypolish filter, "Killed" message after 2nd Sam File gets load
#23 by schlaepferp was closed May 7, 2024
1
Suggestion for local realignment
#22 by YannDussert was closed Apr 15, 2024
1
Suggesting the use of anyhow or thiserror
#19 by lavafroth was closed Feb 7, 2024
1
Error: query name contig_1214 in SAM but not in assembly
#18 by FA387 was closed Oct 25, 2023
1
Error: could not automatically determine read pair orientation
#17 by atiaamin2019 was closed Jan 15, 2024
9
Core dump......
#16 by tnn111 was closed Jan 15, 2024
6
Recommendation on how many iterations of polypolish
#15 by crarlus was closed May 4, 2023
1
Run keeps prematurely ending...
#14 by rmormando was closed Jan 15, 2024
3
Changes file
#13 by suzukimicro was closed Jan 15, 2024
1
Inquiry
#12 by songmj86 was closed Feb 24, 2023
1
draft assemblies
#11 by hkaspersen was closed Feb 24, 2023
1
More alignments after filtering with polypolish_insert_filter.py
#10 by williamsmicrobegenome was closed May 30, 2022
1
Bad sam files (Cigar and read don't match) when using BWA but works with bowtie2
#9 by UriNeri was closed Feb 24, 2023
3
Docker image for polypolish
#8 by maxbranger was closed Mar 29, 2022
1
Preserve original contig names when using Polypolish enhancement New feature or request
#7 by jmtsuji was closed Jan 15, 2024
7
Run failed after 14 hours - error not clear
#6 by lfurn was closed May 30, 2022
1
Are bases with "a depth of zero" corrected?
#5 by ilnamkang was closed Mar 29, 2022
1
Memory error while loading metagenome assembly for polishing
#4 by ckeuschn was closed Jan 13, 2022
4
Polypolish for metagenomes
#3 by jmtsuji was closed Nov 2, 2021
3
loading alignment step: end-to-end filter question
#2 by devonorourke was closed Sep 17, 2021
2
ends vs interior
#1 by devonorourke was closed Sep 17, 2021
1
ProTip! Adding no:label will show everything without a label.