Update README for PSAIA config file's customization of filepaths

sailfish009 · Oct 5, 2021 · 55cd9de · 55cd9de
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diff --git a/README.md b/README.md
@@ -380,6 +380,11 @@ cd "$MY_LOCAL"/PSAIA_1.0_source/bin/linux
 ./psa/psa
 ```
 
+**Finally, substitute your absolute filepath for DeepInteract**
+(i.e., where on your local storage device you downloaded the
+repository to) **anywhere DeepInteract's local repository is
+referenced in `project/datasets/builder/psaia_config_file_input.txt`.**
+
 ## Training
 
 ### Download training and cross-validation DGLGraphs

diff --git a/project/datasets/builder/psaia_config_file_casp_capri.txt b/project/datasets/builder/psaia_config_file_casp_capri.txt
diff --git a/project/datasets/builder/psaia_config_file_dips.txt b/project/datasets/builder/psaia_config_file_dips.txt
diff --git a/project/datasets/builder/psaia_config_file_input.txt b/project/datasets/builder/psaia_config_file_input.txt
@@ -5,14 +5,14 @@ z_slice: 0.25
 r_solvent: 1.4
 write_asa: 0
 calc_rasa: 0
-standard_asa: /home/alexm/Repositories/Personal_Repositories/DeepInteract/project/datasets/builder/psaia_natural_asa.asa
+standard_asa: /home/user/Repositories/DeepInteract/project/datasets/builder/psaia_natural_asa.asa
 calc_dpx: 0
 calc_cx: 1
 cx_threshold: 10
 cx_volume: 20.1
 calc_hydro: 0
-hydro_file: /home/alexm/Repositories/Personal_Repositories/DeepInteract/project/datasets/builder/psaia_hydrophobicity.hpb
-radii_filename: /home/alexm/Repositories/Personal_Repositories/DeepInteract/project/datasets/builder/psaia_chothia.radii
+hydro_file: /home/user/Repositories/DeepInteract/project/datasets/builder/psaia_hydrophobicity.hpb
+radii_filename: /home/user/Repositories/DeepInteract/project/datasets/builder/psaia_chothia.radii
 write_xml: 0
 write_table: 1
-output_dir: /home/alexm/Repositories/Personal_Repositories/DeepInteract/project/datasets/Input/interim/external_feats/PSAIA/INPUT
+output_dir: /home/user/Repositories/DeepInteract/project/datasets/Input/interim/external_feats/PSAIA/INPUT