Protein secondary Structure Prediction in Deep Learning

PyTorch implementations of protein secondary structure prediction on CB513.

Dataset

I used CB513 dataset of https://github.com/alrojo/CB513.

sequence length (train)	sequence length (test)

amino acid (train)	amino acid (test)

secondary structure label(train)	secondary structure label (test)

Usage

You can get more infomations by adding -h option.

pssp

python main.py

Acknowledgement

• https://github.com/alrojo/CB513
• Li, Zhen; Yu, Yizhou, Protein Secondary Structure Prediction Using Cascaded Convolutional and Recurrent Neural Networks, 2016.