+

sailfish009 · Apr 25, 2021 · 7912c6f · 7912c6f
1 parent dbf60a8
commit 7912c6f
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/evaluation/Snakefile b/evaluation/Snakefile
@@ -389,8 +389,8 @@ rule desalt_gtf_align:
         if wildcards.dataset == "sirv":
             shell("/usr/bin/time -v  deSALT aln {index} {input.fastq} --noncan 4 -d 10  -s 2 -l 14  -t 19 --gtf {input.desalt_gtf_annotation_outfile}  -o {output.sam} -f {tempfile} 2>&1 | tee {output.time_and_mem} ") 
         else:
-            # Switch back to deSALT_v1.5.2 on ALZ because newer version segfaults
-            shell("/usr/bin/time -v  deSALT_1.5.2 aln {index} {input.fastq} --max-intron-len 500000 -d 10  -s 2 -l 14  -t 19 --gtf {input.desalt_gtf_annotation_outfile}  -o {output.sam} -f {tempfile} 2>&1 | tee {output.time_and_mem} ") 
+            # Switch back to deSALT-1.5.5 on ALZ because newer version segfaults
+            shell("/usr/bin/time -v  deSALT-1.5.5 aln {index} {input.fastq} --max-intron-len 500000 -d 10  -s 2 -l 14  -t 19 --gtf {input.desalt_gtf_annotation_outfile}  -o {output.sam} -f {tempfile} 2>&1 | tee {output.time_and_mem} ") 
 
 
 # rule graphmap2_index: