reverting to older desalt version for one dataset due to segfault in …

…new version
sailfish009 · Apr 25, 2021 · d03c8be · d03c8be
1 parent fdb10be
commit d03c8be
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/evaluation/Snakefile b/evaluation/Snakefile
@@ -388,7 +388,7 @@ rule desalt_gtf_align:
         work_dir = tempfile.mkdtemp()
         tempfile = os.path.join(work_dir, "desalt_gtf_temp_prefix")
         # Switch back to deSALT_v1.5.1 on simulated_ens and simulated because newer version did not complete
-        shell("/usr/bin/time -v  deSALT aln {index} {input.fastq} --max-intron-len 500000 -d 10  -s 2 -l 14  -t 19 --gtf {input.desalt_gtf_annotation_outfile} -o {output.sam} -f {tempfile}  2>&1 | tee {output.time_and_mem} ") 
+        shell("/usr/bin/time -v  deSALT_1.5.2 aln {index} {input.fastq} --max-intron-len 500000 -d 10  -s 2 -l 14  -t 19 --gtf {input.desalt_gtf_annotation_outfile} -o {output.sam} -f {tempfile}  2>&1 | tee {output.time_and_mem} ") 
 
 
 # rule graphmap2_index: