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fix naming of example data in doc examples #387

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Oct 1, 2023
Merged

fix naming of example data in doc examples #387

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fix naming of example data in doc examples
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@eroell
eroell committed Sep 30, 2023
commit 004dcc84f770f675499808e1dbe30fdb0450c307
12 changes: 6 additions & 6 deletions pertpy/tools/_distances/_distances.py
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Original file line number Diff line number Diff line change
Expand Up @@ -48,7 +48,7 @@ class Distance:

Examples:
>>> import pertpy as pt
>>> adata = pt.dt.distance_example_data()
>>> adata = pt.dt.distance_example()
>>> Distance = pt.tools.Distance(metric="edistance")
>>> X = adata.obsm["X_pca"][adata.obs["perturbation"] == "p-sgCREB1-2"]
>>> Y = adata.obsm["X_pca"][adata.obs["perturbation"] == "control"]
Expand Down Expand Up @@ -100,7 +100,7 @@ def __call__(

Examples:
>>> import pertpy as pt
>>> adata = pt.dt.distance_example_data()
>>> adata = pt.dt.distance_example()
>>> Distance = pt.tools.Distance(metric="edistance")
>>> X = adata.obsm["X_pca"][adata.obs["perturbation"] == "p-sgCREB1-2"]
>>> Y = adata.obsm["X_pca"][adata.obs["perturbation"] == "control"]
Expand Down Expand Up @@ -131,9 +131,9 @@ def pairwise(

Examples:
>>> import pertpy as pt
>>> adata = pt.dt.distance_example_data()
>>> adata = pt.dt.distance_example()
>>> Distance = pt.tools.Distance(metric="edistance")
>>> pairwise_df = distance.pairwise(adata, groupby="perturbation")
>>> pairwise_df = Distance.pairwise(adata, groupby="perturbation")
"""
groups = adata.obs[groupby].unique() if groups is None else groups
grouping = adata.obs[groupby].copy()
Expand Down Expand Up @@ -205,9 +205,9 @@ def onesided_distances(

Examples:
>>> import pertpy as pt
>>> adata = pt.dt.distance_example_data()
>>> adata = pt.dt.distance_example()
>>> Distance = pt.tools.Distance(metric="edistance")
>>> pairwise_df = distance.onesided_distances(adata, groupby="perturbation", selected_group="control")
>>> pairwise_df = Distance.onesided_distances(adata, groupby="perturbation", selected_group="control")
"""
groups = adata.obs[groupby].unique() if groups is None else groups
grouping = adata.obs[groupby].copy()
Expand Down
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