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Mayo Clinic
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WSITools Public
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
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TGSA Public
Forked from violet-sto/TGSAPyTorch implementation of <<TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarity Augmentation>>
Python MIT License UpdatedMar 26, 2024 -
Re-stained_WSIs_Registration Public
Re-stained whole slide image alignment
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Singularity Public
Forked from JDACS4C-IMPROVE/SingularitySingularity definitions that can be extended to support execution of community models.
Shell MIT License UpdatedSep 11, 2023 -
QuPath_Utility_Scripts Public
Forked from VillasboasLab/QuPath_Utility_Scriptsa bunch of independent scripts to perform tasks within QuPath to aid in cell classification & other utility
Jupyter Notebook MIT License UpdatedJun 30, 2023 -
Adversarial-learning-of-cancer-tissue-representations Public
Forked from AdalbertoCq/Adversarial-learning-of-cancer-tissue-representationsCorresponding code of 'Quiros, A. C., Coudray, N., Yeaton, A., Sunhem, W., Murray-Smith, R., Tsirigos, A., Yuan, K. Adversarial learning of cancer tissue representations. The 24th International Con…
Python UpdatedJun 6, 2023 -
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HIPT Public
Forked from mahmoodlab/HIPTHierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
Jupyter Notebook Other UpdatedApr 19, 2023 -
MxIF_DAPI_ref_QC Public
MxIF image quality checking
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CellularComposition Public
Interactive modules to digitally annotate H&E whole slide images, construct cell and tissue level features and classify cell types. Specifically for a case study of differentiating borderline and h…
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gcp-for-bioinformatics Public
Forked from lynnlangit/gcp-for-bioinformaticsGCP for Bioinformatics Researchers
Jupyter Notebook Apache License 2.0 UpdatedDec 10, 2022 -
CalculateSUV Public
Matlab code for calculating SUV in PET images
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WSI2DICOM Public
Simple prototype of converting whole slide image (WSI) to multiframe DICOM images
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TumorStromaReaction Public
Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.
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HistoVAE Public
Forked from willgdjones/HistoVAEThis repository contains work towards HistoVAE: creating meaningful representations of Histopathology images using Variational Autoencoders.
Python UpdatedNov 22, 2022 -
WSIPenMarkingRemoval Public
Remove pen-marking annotations on whole slide images(WSIs) for data achiving.
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OpenGLInsightsCode Public
Forked from OpenGLInsights/OpenGLInsightsCodeSource code for OpenGL Insights
C UpdatedJun 21, 2022 -
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PianoSheets Public
Forked from boweihan/PianoSheetsPiano sheets from Kyle Landry, vkgoeswild, Beethoven, Yiruma, Zohar002, etc.
UpdatedMar 24, 2022 -
tcrp-reproduce Public
Forked from shfong/tcrp-reproduceAttempting to reproduce TCRP by adhering as close as positive to the original code
Jupyter Notebook UpdatedNov 17, 2021 -
DrugCell Public
Forked from idekerlab/DrugCellA visible neural network model for drug response prediction
Python MIT License UpdatedNov 1, 2021 -
deep-graph-matching-consensus Public
Forked from rusty1s/deep-graph-matching-consensusImplementation of "Deep Graph Matching Consensus" in PyTorch
Python MIT License UpdatedSep 22, 2021 -
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serving Public
Forked from tensorflow/servingA flexible, high-performance serving system for machine learning models
C++ Apache License 2.0 UpdatedSep 4, 2021 -
invariant-haralick-features Public
Forked from tomlof/invariant-haralick-featuresMatlab and python code (coming soon) for calculating the invariant Haralick features.
Python UpdatedAug 16, 2021 -
Pytorch-UNet Public
Forked from milesial/Pytorch-UNetPyTorch implementation of the U-Net for image semantic segmentation with high quality images
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Thread-Portrait Public
Forked from Neldoret/Thread-PortraitHere is the code I used to make my Thread Portrait.
Python MIT License UpdatedApr 12, 2021