#2684 Update changelog #139
Workflow file for this run
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| # ----------------------------------------------------------------------------- | |
| # BSD 3-Clause License | |
| # | |
| # Copyright (c) 2024, Science and Technology Facilities Council. | |
| # All rights reserved. | |
| # | |
| # Redistribution and use in source and binary forms, with or without | |
| # modification, are permitted provided that the following conditions are met: | |
| # | |
| # * Redistributions of source code must retain the above copyright notice, this | |
| # list of conditions and the following disclaimer. | |
| # | |
| # * Redistributions in binary form must reproduce the above copyright notice, | |
| # this list of conditions and the following disclaimer in the documentation | |
| # and/or other materials provided with the distribution. | |
| # | |
| # * Neither the name of the copyright holder nor the names of its | |
| # contributors may be used to endorse or promote products derived from | |
| # this software without specific prior written permission. | |
| # | |
| # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS | |
| # "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT | |
| # LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS | |
| # FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE | |
| # COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, | |
| # INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, | |
| # BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; | |
| # LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER | |
| # CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT | |
| # LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN | |
| # ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE | |
| # POSSIBILITY OF SUCH DAMAGE. | |
| # ----------------------------------------------------------------------------- | |
| # Author S. Siso, STFC Daresbury Lab | |
| # This workflow will use a self-hosted runner to perform the more expensive | |
| # NEMOv5 integrations tests that are not run on GHA systems. | |
| name: NEMOv5 Integration Tests | |
| on: | |
| push | |
| jobs: | |
| run_if_on_mirror: | |
| if: ${{ github.repository == 'stfc/PSyclone-mirror' }} | |
| runs-on: self-hosted | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| # This is required to get the commit history for merge commits for | |
| # the ci-skip check below. | |
| fetch-depth: '0' | |
| - name: Check for [skip ci] in commit message | |
| uses: mstachniuk/ci-skip@v1 | |
| with: | |
| # This setting causes the tests to 'fail' if [skip ci] is specified | |
| fail-fast: true | |
| commit-filter: '[skip ci]' | |
| - name: Install dependencies | |
| run: | | |
| module load python/${PYTHON_VERSION} | |
| python -m venv .runner_venv | |
| source .runner_venv/bin/activate | |
| python -m pip install --upgrade pip | |
| # Uncomment the below to use the submodule version of fparser rather | |
| # than the latest release from pypi. | |
| # pip install external/fparser | |
| pip install . | |
| # PSyclone passthrough for 5.0-beta of NEMO. | |
| - name: NEMO 5.0 gfortran passthrough | |
| run: | | |
| # Set up environment | |
| source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh | |
| spack unload && spack load nemo-build-environment%gcc@14 | |
| source .runner_venv/bin/activate | |
| export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts | |
| export PSYCLONE_HOME=${PWD}/.runner_venv | |
| export NEMO_DIR=${HOME}/NEMOv5 | |
| # Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS | |
| cd $NEMO_DIR | |
| cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm | |
| export FCFLAGS="-fdefault-real-8 -O2 -fcray-pointer -ffree-line-length-none -g" | |
| # Clean up and compile | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_PASSTHROUGH_GCC clean -y | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_PASSTHROUGH_GCC -p ${PSYCLONE_NEMO_DIR}/passthrough.py \ | |
| add_key "key_nosignedzero" -j 4 -v 1 | |
| # Run test | |
| cd $NEMO_DIR/tests/BENCH_PASSTHROUGH_GCC/EXP00 | |
| cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg | |
| mpirun -np 4 ./nemo | |
| tail run.stat | |
| # This was produced with gfortran, so we can do an exact diff | |
| diff $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.small.100steps run.stat | |
| export VAR_TIME=$(awk '/ step /{print $3}' timing.output | head -n 1 | sed -e 's/s//') | |
| echo "Time-stepping duration = " $VAR_TIME | |
| - name: NEMO 5.0 nvidia passthrough | |
| run: | | |
| # Set up environment | |
| source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh | |
| spack unload && spack load nemo-build-environment%nvhpc@24.5 | |
| source .runner_venv/bin/activate | |
| export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts | |
| export PSYCLONE_HOME=${PWD}/.runner_venv | |
| export NEMO_DIR=${HOME}/NEMOv5 | |
| # Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS | |
| cd $NEMO_DIR | |
| cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm | |
| export FCFLAGS="-i4 -Mr8 -O2 -Minline -Mcray=pointer -Mpre -g" | |
| # Clean up and compile | |
| # Without key_mpi_off it fails to compile (even without psyclone) | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_PASSTHROUGH_NVHPC clean -y | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_PASSTHROUGH_NVHPC -p ${PSYCLONE_NEMO_DIR}/passthrough.py \ | |
| add_key "key_mpi_off key_nosignedzero" -j 4 -v 1 | |
| # Run test | |
| cd $NEMO_DIR/tests/BENCH_PASSTHROUGH_NVHPC/EXP00 | |
| cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg | |
| ./nemo | |
| python $PSYCLONE_NEMO_DIR/compare_ouput.py $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.small.100steps run.stat | |
| tail run.stat | |
| export VAR_TIME=$(awk '/ step /{print $3}' timing.output | head -n 1 | sed -e 's/s//') | |
| echo "Time-stepping duration = " $VAR_TIME | |
| - name: NEMO 5.0 Intel passthrough | |
| run: | | |
| # Set up environment | |
| source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh | |
| spack unload && spack load nemo-build-environment%oneapi | |
| source .runner_venv/bin/activate | |
| export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts | |
| export PSYCLONE_HOME=${PWD}/.runner_venv | |
| export NEMO_DIR=${HOME}/NEMOv5 | |
| # Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS | |
| cd $NEMO_DIR | |
| cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm | |
| export FCFLAGS="-i4 -r8 -O2 -fp-model precise -fno-alias -g" | |
| # Clean up and compile | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_PASSTHROUGH_ONEAPI clean -y | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_PASSTHROUGH_ONEAPI -p ${PSYCLONE_NEMO_DIR}/passthrough.py \ | |
| add_key "key_nosignedzero" -j 4 -v 1 | |
| # Run test | |
| cd $NEMO_DIR/tests/BENCH_PASSTHROUGH_ONEAPI/EXP00 | |
| cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg | |
| mpirun -np 6 ./nemo | |
| tail run.stat | |
| python $PSYCLONE_NEMO_DIR/compare_ouput.py $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.small.100steps run.stat | |
| export VAR_TIME=$(awk '/ step /{print $3}' timing.output | head -n 1 | sed -e 's/s//') | |
| echo "Time-stepping duration = " $VAR_TIME | |
| - name: NEMO 5.0 gfortran OpenMP for CPUs | |
| run: | | |
| # Set up environment | |
| source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh | |
| spack unload && spack load nemo-build-environment%gcc@14 | |
| source .runner_venv/bin/activate | |
| export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts | |
| export PSYCLONE_HOME=${PWD}/.runner_venv | |
| export NEMO_DIR=${HOME}/NEMOv5 | |
| # Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS | |
| cd $NEMO_DIR | |
| cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm | |
| export FCFLAGS="-fdefault-real-8 -O2 -fcray-pointer -ffree-line-length-none -g -fopenmp" | |
| # Clean up and compile | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_OMP_THREADING_GCC clean -y | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_OMP_THREADING_GCC -p ${PSYCLONE_NEMO_DIR}/omp_cpu_trans.py \ | |
| add_key "key_nosignedzero" -j 4 -v 1 | |
| # Run test | |
| cd $NEMO_DIR/tests/BENCH_OMP_THREADING_GCC/EXP00 | |
| cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg | |
| OMP_NUM_THREADS=4 mpirun -np 1 ./nemo | |
| tail run.stat | |
| python $PSYCLONE_NEMO_DIR/compare_ouput.py $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.small.100steps run.stat | |
| export VAR_TIME=$(awk '/ step /{print $3}' timing.output | head -n 1 | sed -e 's/s//') | |
| echo "Time-stepping duration = " $VAR_TIME | |
| - name: NEMO 5.0 nvidia OpenMP for GPUs (managed memory) | |
| run: | | |
| # Set up environment | |
| source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh | |
| spack unload && spack load nemo-build-environment%nvhpc@24.5 | |
| source .runner_venv/bin/activate | |
| export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts | |
| export PSYCLONE_HOME=${PWD}/.runner_venv | |
| export NEMO_DIR=${HOME}/NEMOv5 | |
| # Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS | |
| # We compile at -O1 to permit comparison of the results. | |
| cd $NEMO_DIR | |
| cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm | |
| export FCFLAGS="-i4 -Mr8 -O3 -Minline -Mcray=pointer -Mpre -g -mp=gpu -gpu=managed" | |
| # Clean up and compile | |
| # Without key_mpi_off it fails to compile (even without psyclone) | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_OMP_OFFLOAD_NVHPC clean -y | |
| ./makenemo -r BENCH -m linux_spack -n BENCH_OMP_OFFLOAD_NVHPC -p ${PSYCLONE_NEMO_DIR}/omp_gpu_trans.py \ | |
| add_key "key_mpi_off key_nosignedzero" -j 4 -v 1 | |
| # Run test | |
| cd $NEMO_DIR/tests/BENCH_OMP_OFFLOAD_NVHPC/EXP00 | |
| cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg | |
| ./nemo | |
| tail run.stat | |
| python $PSYCLONE_NEMO_DIR/compare_ouput.py $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.small.100steps run.stat | |
| export VAR_TIME=$(awk '/ step /{print $3}' timing.output | head -n 1 | sed -e 's/s//') | |
| echo "Time-stepping duration = " $VAR_TIME |