GitHub - tayloj22/bio371project5: Repository for the completion of the semester project for Computational Biology. Made with Kirk Phillips.

tayloj22 / bio371project5 Public

Notifications You must be signed in to change notification settings
Fork 0
Star 0

Repository for the completion of the semester project for Computational Biology. Made with Kirk Phillips.

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
bias_measures.pl		bias_measures.pl
mousecut.txt		mousecut.txt
mousedna.txt		mousedna.txt
readme.txt		readme.txt

Repository files navigation

Our mouse DNA example:
Mus musculus strain C57BL/6J chromosome 5, GRCm38.p6C57BL/6J
https://www.ncbi.nlm.nih.gov/nuccore/NC_000071.6?report=fasta&from=142903115&to=142907976&strand=true

Our mouse Codon Usage Table example:
Mus musculus [gbrod]: 53036 CDS's (24533776 codons)
https://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=10090

Please note that if any spaces occur between the frequency and count within the codon usage table, our program will treat them as separate tokens and misfile information.  This may occur if the count is smaller than the rest, and must be fixed before our program can properly parse it.