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receive,ruler: Upgraded TSDB and used ChunkIterator in Series TSDB St…
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…ore.

Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
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@bwplotka
bwplotka committed Jul 27, 2020
1 parent 7369849 commit 8fc06c7
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -32,6 +32,8 @@ We use *breaking* word for marking changes that are not backward compatible (rel

- [#2893](https://github.com/thanos-io/thanos/pull/2893) Store: Rename metric `thanos_bucket_store_cached_postings_compression_time_seconds` to `thanos_bucket_store_cached_postings_compression_time_seconds_total`.
- [#2915](https://github.com/thanos-io/thanos/pull/2915) Receive,Ruler: Enable TSDB directory locking by default. Add a new flag (`--tsdb.no-lockfile`) to override behavior.
- [#2876](https://github.com/thanos-io/thanos/pull/2876) Receive,Ruler: Updated TSDB and switched to ChunkIterators instead of sample one, which avoids
unnecessary decoding / encoding.

## [v0.14.0](https://github.com/thanos-io/thanos/releases/tag/v0.14.0) - 2020.07.10

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3 changes: 2 additions & 1 deletion go.mod
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Original file line number Diff line number Diff line change
Expand Up @@ -73,7 +73,8 @@ require (
// See https://github.com/thanos-io/thanos/issues/1415
replace (
// Make sure Cortex is not forcing us to some other Prometheus version.
github.com/prometheus/prometheus => github.com/prometheus/prometheus v1.8.2-0.20200714083622-823b218e1b2e
// TODO: This points to https://github.com/prometheus/prometheus/pull/7069. Remove and point to master once merged.
github.com/prometheus/prometheus => github.com/prometheus/prometheus v1.8.2-0.20200724113653-2605f60545cb
k8s.io/klog => k8s.io/klog v0.3.1
k8s.io/kube-openapi => k8s.io/kube-openapi v0.0.0-20190228160746-b3a7cee44a30
)
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9 changes: 5 additions & 4 deletions go.sum
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Original file line number Diff line number Diff line change
Expand Up @@ -876,8 +876,8 @@ github.com/prometheus/procfs v0.0.8/go.mod h1:7Qr8sr6344vo1JqZ6HhLceV9o3AJ1Ff+Gx
github.com/prometheus/procfs v0.0.11/go.mod h1:lV6e/gmhEcM9IjHGsFOCxxuZ+z1YqCvr4OA4YeYWdaU=
github.com/prometheus/procfs v0.1.3 h1:F0+tqvhOksq22sc6iCHF5WGlWjdwj92p0udFh1VFBS8=
github.com/prometheus/procfs v0.1.3/go.mod h1:lV6e/gmhEcM9IjHGsFOCxxuZ+z1YqCvr4OA4YeYWdaU=
github.com/prometheus/prometheus v1.8.2-0.20200714083622-823b218e1b2e h1:NCV6Sz7qguIRsvG6Aii4wDwWeiUPadaWT/4l4eP7Ax0=
github.com/prometheus/prometheus v1.8.2-0.20200714083622-823b218e1b2e/go.mod h1:F3OdzfA9PNvJ0PxQwHL58k9zOhOLhtcIAOtVqwyYxwk=
github.com/prometheus/prometheus v1.8.2-0.20200724113653-2605f60545cb h1:P2x7BW33WySguYW4ZHG5HaKRI8yOiksDfH56ucTHbwk=
github.com/prometheus/prometheus v1.8.2-0.20200724113653-2605f60545cb/go.mod h1:+/y4DzJ62qmhy0o/H4PtXegRXw+80E8RVRHhLbv+bkM=
github.com/rafaeljusto/redigomock v0.0.0-20190202135759-257e089e14a1/go.mod h1:JaY6n2sDr+z2WTsXkOmNRUfDy6FN0L6Nk7x06ndm4tY=
github.com/rcrowley/go-metrics v0.0.0-20181016184325-3113b8401b8a/go.mod h1:bCqnVzQkZxMG4s8nGwiZ5l3QUCyqpo9Y+/ZMZ9VjZe4=
github.com/retailnext/hllpp v1.0.1-0.20180308014038-101a6d2f8b52/go.mod h1:RDpi1RftBQPUCDRw6SmxeaREsAaRKnOclghuzp/WRzc=
Expand Down Expand Up @@ -1020,6 +1020,8 @@ go.uber.org/atomic v1.6.0 h1:Ezj3JGmsOnG1MoRWQkPBsKLe9DwWD9QeXzTRzzldNVk=
go.uber.org/atomic v1.6.0/go.mod h1:sABNBOSYdrvTF6hTgEIbc7YasKWGhgEQZyfxyTvoXHQ=
go.uber.org/automaxprocs v1.2.0 h1:+RUihKM+nmYUoB9w0D0Ov5TJ2PpFO2FgenTxMJiZBZA=
go.uber.org/automaxprocs v1.2.0/go.mod h1:YfO3fm683kQpzETxlTGZhGIVmXAhaw3gxeBADbpZtnU=
go.uber.org/goleak v1.0.0 h1:qsup4IcBdlmsnGfqyLl4Ntn3C2XCCuKAE7DwHpScyUo=
go.uber.org/goleak v1.0.0/go.mod h1:8a7PlsEVH3e/a/GLqe5IIrQx6GzcnRmZEufDUTk4A7A=
go.uber.org/multierr v1.1.0/go.mod h1:wR5kodmAFQ0UK8QlbwjlSNy0Z68gJhDJUG5sjR94q/0=
go.uber.org/multierr v1.3.0/go.mod h1:VgVr7evmIr6uPjLBxg28wmKNXyqE9akIJ5XnfpiKl+4=
go.uber.org/tools v0.0.0-20190618225709-2cfd321de3ee/go.mod h1:vJERXedbb3MVM5f9Ejo0C68/HhF8uaILCdgjnY+goOA=
Expand Down Expand Up @@ -1251,6 +1253,7 @@ golang.org/x/tools v0.0.0-20190911174233-4f2ddba30aff/go.mod h1:b+2E5dAYhXwXZwtn
golang.org/x/tools v0.0.0-20191012152004-8de300cfc20a/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
golang.org/x/tools v0.0.0-20191029041327-9cc4af7d6b2c/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
golang.org/x/tools v0.0.0-20191029190741-b9c20aec41a5/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
golang.org/x/tools v0.0.0-20191108193012-7d206e10da11/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
golang.org/x/tools v0.0.0-20191111182352-50fa39b762bc/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
golang.org/x/tools v0.0.0-20191113191852-77e3bb0ad9e7/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
golang.org/x/tools v0.0.0-20191115202509-3a792d9c32b2/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
Expand Down Expand Up @@ -1334,7 +1337,6 @@ google.golang.org/genproto v0.0.0-20200224152610-e50cd9704f63/go.mod h1:55QSHmfG
google.golang.org/genproto v0.0.0-20200331122359-1ee6d9798940/go.mod h1:55QSHmfGQM9UVYDPBsyGGes0y52j32PQ3BqQfXhyH3c=
google.golang.org/genproto v0.0.0-20200513103714-09dca8ec2884/go.mod h1:55QSHmfGQM9UVYDPBsyGGes0y52j32PQ3BqQfXhyH3c=
google.golang.org/genproto v0.0.0-20200526211855-cb27e3aa2013/go.mod h1:NbSheEEYHJ7i3ixzK3sjbqSGDJWnxyFXZblF3eUsNvo=
google.golang.org/genproto v0.0.0-20200624020401-64a14ca9d1ad/go.mod h1:FWY/as6DDZQgahTzZj3fqbO1CbirC29ZNUFHwi0/+no=
google.golang.org/genproto v0.0.0-20200710124503-20a17af7bd0e h1:k+p/u26/lVeNEpdxSeUrm7rTvoFckBKaf7gTzgmHyDA=
google.golang.org/genproto v0.0.0-20200710124503-20a17af7bd0e/go.mod h1:FWY/as6DDZQgahTzZj3fqbO1CbirC29ZNUFHwi0/+no=
google.golang.org/grpc v1.14.0/go.mod h1:yo6s7OP7yaDglbqo1J04qKzAhqBH6lvTonzMVmEdcZw=
Expand All @@ -1357,7 +1359,6 @@ google.golang.org/grpc v1.29.1 h1:EC2SB8S04d2r73uptxphDSUG+kTKVgjRPF+N3xpxRB4=
google.golang.org/grpc v1.29.1/go.mod h1:itym6AZVZYACWQqET3MqgPpjcuV5QH3BxFS3IjizoKk=
google.golang.org/grpc v1.30.0 h1:M5a8xTlYTxwMn5ZFkwhRabsygDY5G8TYLyQDBxJNAxE=
google.golang.org/grpc v1.30.0/go.mod h1:N36X2cJ7JwdamYAgDz+s+rVMFjt3numwzf/HckM8pak=
google.golang.org/grpc/examples v0.0.0-20200709232328-d8193ee9cc3e/go.mod h1:5j1uub0jRGhRiSghIlrThmBUgcgLXOVJQ/l1getT4uo=
google.golang.org/protobuf v0.0.0-20200109180630-ec00e32a8dfd/go.mod h1:DFci5gLYBciE7Vtevhsrf46CRTquxDuWsQurQQe4oz8=
google.golang.org/protobuf v0.0.0-20200221191635-4d8936d0db64/go.mod h1:kwYJMbMJ01Woi6D6+Kah6886xMZcty6N08ah7+eCXa0=
google.golang.org/protobuf v0.0.0-20200228230310-ab0ca4ff8a60/go.mod h1:cfTl7dwQJ+fmap5saPgwCLgHXTUD7jkjRqWcaiX5VyM=
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124 changes: 60 additions & 64 deletions pkg/store/tsdb.go
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,6 @@ import (
"github.com/prometheus/client_golang/prometheus"
"github.com/prometheus/prometheus/pkg/labels"
"github.com/prometheus/prometheus/storage"
"github.com/prometheus/prometheus/tsdb/chunkenc"
"google.golang.org/grpc/codes"
"google.golang.org/grpc/status"

Expand All @@ -24,18 +23,19 @@ import (
)

type TSDBReader interface {
storage.Queryable
storage.ChunkQueryable
StartTime() (int64, error)
}

// TSDBStore implements the store API against a local TSDB instance.
// It attaches the provided external labels to all results. It only responds with raw data
// and does not support downsampling.
type TSDBStore struct {
logger log.Logger
db TSDBReader
component component.StoreAPI
externalLabels labels.Labels
logger log.Logger
db TSDBReader
component component.StoreAPI
externalLabels labels.Labels
maxBytesPerFrame int
}

// ReadWriteTSDBStore is a TSDBStore that can also be written to.
Expand All @@ -50,10 +50,11 @@ func NewTSDBStore(logger log.Logger, _ prometheus.Registerer, db TSDBReader, com
logger = log.NewNopLogger()
}
return &TSDBStore{
logger: logger,
db: db,
component: component,
externalLabels: externalLabels,
logger: logger,
db: db,
component: component,
externalLabels: externalLabels,
maxBytesPerFrame: 1024 * 1024, // 1MB as recommended by gRPC.
}
}

Expand Down Expand Up @@ -109,7 +110,7 @@ func (s *TSDBStore) Series(r *storepb.SeriesRequest, srv storepb.Store_SeriesSer
return status.Error(codes.InvalidArgument, err.Error())
}

q, err := s.db.Querier(context.Background(), r.MinTime, r.MaxTime)
q, err := s.db.ChunkQuerier(context.Background(), r.MinTime, r.MaxTime)
if err != nil {
return status.Error(codes.Internal, err.Error())
}
Expand All @@ -119,72 +120,67 @@ func (s *TSDBStore) Series(r *storepb.SeriesRequest, srv storepb.Store_SeriesSer
set = q.Select(false, nil, matchers...)
respSeries storepb.Series
)

// Stream at most one series per frame; series may be split over multiple frames according to maxBytesInFrame.
for set.Next() {
series := set.At()

respSeries.Labels = s.translateAndExtendLabels(series.Labels(), s.externalLabels)

if !r.SkipChunks {
// TODO(fabxc): An improvement over this trivial approach would be to directly
// use the chunks provided by TSDB in the response.
c, err := s.encodeChunks(series.Iterator(), MaxSamplesPerChunk)
if err != nil {
return status.Errorf(codes.Internal, "encode chunk: %s", err)
respSeries.Chunks = respSeries.Chunks[:0]
if r.SkipChunks {
if err := srv.Send(storepb.NewSeriesResponse(&respSeries)); err != nil {
return status.Error(codes.Aborted, err.Error())
}

respSeries.Chunks = append(respSeries.Chunks[:0], c...)
continue
}

if err := srv.Send(storepb.NewSeriesResponse(&respSeries)); err != nil {
return status.Error(codes.Aborted, err.Error())
frameBytesLeft := s.maxBytesPerFrame
for _, lbl := range respSeries.Labels {
frameBytesLeft -= lbl.Size()
}
}
if err := set.Err(); err != nil {
return status.Error(codes.Internal, err.Error())
}
return nil
}

func (s *TSDBStore) encodeChunks(it chunkenc.Iterator, maxSamplesPerChunk int) (chks []storepb.AggrChunk, err error) {
var (
chkMint int64
chk *chunkenc.XORChunk
app chunkenc.Appender
isNext = it.Next()
)

for isNext {
if chk == nil {
chk = chunkenc.NewXORChunk()
app, err = chk.Appender()
if err != nil {
return nil, err
chIter := series.Iterator()
isNext := chIter.Next()
for isNext {
chk := chIter.At()
if chk.Chunk == nil {
return status.Errorf(codes.Internal, "TSDBStore: found not populated chunk returned by SeriesSet at ref: %v", chk.Ref)
}
chkMint, _ = it.At()
}

app.Append(it.At())
chkMaxt, _ := it.At()
respSeries.Chunks = append(respSeries.Chunks, storepb.AggrChunk{
MinTime: chk.MinTime,
MaxTime: chk.MaxTime,
Raw: &storepb.Chunk{
Type: storepb.Chunk_Encoding(chk.Chunk.Encoding() - 1), // proto chunk encoding is one off to TSDB one.
Data: chk.Chunk.Bytes(),
},
})
frameBytesLeft -= respSeries.Chunks[len(respSeries.Chunks)-1].Size()

// We are fine with minor inaccuracy of max bytes per frame. The inaccuracy will be max of full chunk size.
isNext = chIter.Next()
if frameBytesLeft > 0 && isNext {
continue
}

isNext = it.Next()
if isNext && chk.NumSamples() < maxSamplesPerChunk {
continue
if err := srv.Send(storepb.NewSeriesResponse(&respSeries)); err != nil {
return status.Error(codes.Aborted, err.Error())
}
respSeries.Chunks = respSeries.Chunks[:0]
}
if err := chIter.Err(); err != nil {
return status.Error(codes.Internal, errors.Wrap(err, "chunk iter").Error())
}

// Cut the chunk.
chks = append(chks, storepb.AggrChunk{
MinTime: chkMint,
MaxTime: chkMaxt,
Raw: &storepb.Chunk{Type: storepb.Chunk_XOR, Data: chk.Bytes()},
})
chk = nil
}
if it.Err() != nil {
return nil, errors.Wrap(it.Err(), "read TSDB series")
if err := set.Err(); err != nil {
return status.Error(codes.Internal, err.Error())
}
for _, w := range set.Warnings() {
if err := srv.Send(storepb.NewWarnSeriesResponse(w)); err != nil {
return status.Error(codes.Aborted, err.Error())
}
}

return chks, nil

return nil
}

// translateAndExtendLabels transforms a metrics into a protobuf label set. It additionally
Expand Down Expand Up @@ -217,7 +213,7 @@ func (s *TSDBStore) translateAndExtendLabels(m, extend labels.Labels) []storepb.
func (s *TSDBStore) LabelNames(ctx context.Context, _ *storepb.LabelNamesRequest) (
*storepb.LabelNamesResponse, error,
) {
q, err := s.db.Querier(ctx, math.MinInt64, math.MaxInt64)
q, err := s.db.ChunkQuerier(ctx, math.MinInt64, math.MaxInt64)
if err != nil {
return nil, status.Error(codes.Internal, err.Error())
}
Expand All @@ -234,7 +230,7 @@ func (s *TSDBStore) LabelNames(ctx context.Context, _ *storepb.LabelNamesRequest
func (s *TSDBStore) LabelValues(ctx context.Context, r *storepb.LabelValuesRequest) (
*storepb.LabelValuesResponse, error,
) {
q, err := s.db.Querier(ctx, math.MinInt64, math.MaxInt64)
q, err := s.db.ChunkQuerier(ctx, math.MinInt64, math.MaxInt64)
if err != nil {
return nil, status.Error(codes.Internal, err.Error())
}
Expand Down

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