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Pan-genome composition of 17 species
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tli14 committed Aug 3, 2022
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Expand Up @@ -4,8 +4,8 @@ library(ggplot2)
library(reshape2)

## pan-genome plot for all the species
data <- read.table(file = "R_code/Supplementary_fig_data/FigS1.summary_species.txt", sep = '\t', header = FALSE)
species_count <- read.table(file = "R_code/Supplementary_fig_data/FigS1.summary_species_count.txt", sep = '\t', header = TRUE)
data <- read.table(file = "R_code/Supplementary_fig_data/FigS3.summary_species.txt", sep = '\t', header = FALSE)
species_count <- read.table(file = "R_code/Supplementary_fig_data/FigS3.summary_species_count.txt", sep = '\t', header = TRUE)

species_order <- factor(data$V1, level = c('Corynebacterium pseudotuberculosis',
'Neisseria meningitidis',
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