incl. docker release

.github/workflows/release.yml

@@ -0,0 +1,32 @@
+name: Publish Docker image
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  push_to_registry:
+    name: Push Docker image to Docker Hub
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out the repo
+        uses: actions/checkout@v4
+
+      - name: Log in to Docker Hub
+        uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_PASSWORD }}
+
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7
+        with:
+          images: trausch/vc
+
+      - name: Build and push Docker image
+        uses: docker/build-push-action@3b5e8027fcad23fda98b2e3ac259d8d67585f671
+        with:
+          push: true
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}

Dockerfile

@@ -1,23 +1,37 @@
 # use the ubuntu base image
-FROM ubuntu:18.04
+FROM ubuntu:22.04
 
 # maintainer
 MAINTAINER Tobias Rausch rausch@embl.de
 
 # install required apt packages
-RUN apt-get update && apt-get install -yq \
+RUN apt-get update && apt-get install -y \
+    autoconf \
     build-essential \
     curl \
     g++ \
     git \
     cmake \
     gthumb \
-    python \
+    libcurl4-gnutls-dev \
+    libboost-date-time-dev \
+    libboost-program-options-dev \
+    libboost-system-dev \
+    libboost-filesystem-dev \
+    libboost-iostreams-dev \
+    libbz2-dev \
+    libdeflate-dev \
+    libhdf5-dev \
+    libncurses-dev \
+    liblzma-dev \    
+    python3 \
     datamash \
     gthumb \
     pkg-config \
     wget \
-    && apt-get clean
+    zlib1g-dev \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*
 
 # install tutorial tools
 RUN cd /opt \

README.md

@@ -1,3 +1,7 @@
+[![Docker CI](https://github.com/tobiasrausch/vc/workflows/Docker%20CI/badge.svg)](https://hub.docker.com/r/trausch/vc/)
+[![GitHub license](https://img.shields.io/badge/License-BSD%203--Clause-blue.svg)](https://github.com/tobiasrausch/vc/blob/master/LICENSE)
+[![GitHub Releases](https://img.shields.io/github/release/tobiasrausch/vc.svg)](https://github.com/tobiasrausch/vc/releases)
+
 # Structural variant calling tutorial using [delly](https://github.com/dellytools/delly).
 
 ## Installation - Linux