A data-centric flow/mass cytometry automated analysis framework
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Updated
Feb 16, 2022 - Python
A data-centric flow/mass cytometry automated analysis framework
Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
Pipeline for flow cytometry anlaysis
Autogating for gate 1 and gate 2 with U-Net.
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