A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
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Updated
Sep 5, 2024 - Nextflow
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
Nextflow pipeline for BlobToolKit for Sanger ToL production suite
🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
MIST: a metagenomic intra-species typing tool.
Maintained elsewhere. See README.
A python implementation of the decontam R package for ASV filtering.
An open-source R package containing decontamination pipelines for low-biomass microbiome data
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